SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91406

Length: 364 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene91406
ATCCCTCACAGAGCCGATAACCGTTGTGAGATTGCGGGATTCGTGATACCGAAGTACGCTCAAATAATAGTCAACGTGTGGGCAATCGCAAGGGACCCTTCAATCTGGAAGGAGCCCTTGAAATTTATGCCGGAGAGATTTCTTGATACGGAGATGAGTAGCGTGGAGTACAAGGGACAAAACTTCGAGCTGATTCCGTTCGGGGCAGGACGGAGAATGTGCGTGGGGCTTCCGTTGGCCAGTCGGATGGTCCATCTGCTGTTGGCGTCGCTTCTCCATCCATTTGAGTGGGCACTTCCCCGAGGCATGACGGGCGACAAAGTGGACATGAGCGACAGGTTTGGACTCACACTGGCTAAGGCGG

Ace file of the UniGene sp_v2.0_unigene91406 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 n=1 Tax=Populus trichocarpa RepID=B9GKS3_POPTR	-	-	4.0e-36	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	cytochrome p450	-	-	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Protein of unknown function DUF247, plant	IPR004158	-	-
Sma3	GC-rich sequence DNA-binding factor	IPR012890	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKD2

Fln msg: Distance to subject end: 16 aas, your sequence is shorter than subject: 121 - 441

Fln protein: IPHRADNRCEIAGFVIPKYAQIIVNVWAIARDPSIWKEPLKFMPERFLDTEMSSVEYKGQNFELIPFGAGRRMCVGLPLASRMVHLLLASLLHPFEWALPRGMTGDKVDMSDRFGLTLAKA

Protein Length: 122

Fln nts: ATCCCTCACAGAGCCGATAACCGTTGTGAGATTGCGGGATTCGTGATACCGAAGTACGCTCAAATAATAGTCAACGTGTGGGCAATCGCAAGGGACCCTTCAATCTGGAAGGAGCCCTTGAAATTTATGCCGGAGAGATTTCTTGATACGGAGATGAGTAGCGTGGAGTACAAGGGACAAAACTTCGAGCTGATTCCGTTCGGGGCAGGACGGAGAATGTGCGTGGGGCTTCCGTTGGCCAGTCGGATGGTCCATCTGCTGTTGGCGTCGCTTCTCCATCCATTTGAGTGGGCACTTCCCCGAGGCATGACGGGCGACAAAGTGGACATGAGCGACAGGTTTGGACTCACACTGGCTAAGGCGG

Fln Alignment:

uma_euler_8026___IPHRADNRCEIAGFVIPKYAQIIVNVWAIARDPSIWKEPLKFMPERFLDTEMSSVEYKGQNFELIPFGAGRRMCVGLPLASRMVHLLLASLLHPFEWALPRGMTGDKVDMSDRFGLTLAKA
B8LKD2_______________IPHRADNRCEIAGFVIPKHTQIIVNVWAIGRDASIWKEPLKFIPERFIDKETSGVDFKGQNFELIPFGAGRRMCVGLPLATRMVHLLLASLLHSFEWAPPQGISADQVDMSDRFGLTLVKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain