SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91402

Length: 411 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene91402
TTGATTTGGAAAAATAACTACAGATTTTGGGAGAAACCAAGTTAAATTGGGACACACTCTTATATTTCCGAATTAATTATCTAAATGCAGGGATGGAGACTGTGGAATGGTGGAAATCTGCTGGATATGATCGATCCGACAATAGTTGGATGTTGCCCTCAAGAACAAGCATTGAGATGCATTCGTGTGGGTCTTCTGTGCGTACAGGCCGATGTGTCATATCGCCCAGCAATGCCTGATGTTGTTCTCATGCTGTCCAACAATTCAGTGGCCATACCGAATCCCACGAAGCCTGCTTTTGTTAGTCCTAGCTTTAGCGGGTTTGTATATCCAAAAGATGGAGCTCTTTCCACGTCATCTACTGCTTCACAAATCCCACTATCAGGCTCAATTTTCCCTGGATGCAATTCT

Ace file of the UniGene sp_v2.0_unigene91402 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine/threonine kinase-like protein [Arabidopsis thaliana] emb\|CAB79270.1\| serine/threonine kinase-like protein [Arabidopsis thaliana]	-	-	6.0e-14	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	protein	-	-	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQB9

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 137 - 290

Fln protein: LIWKNNYRFWEKPS*IGTHSYISELII*MQGWRLWNGGNLLDMIDPTIVGCCPQEQALRCIRVGLLCVQADVSYRPAMPDVVLMLSNNSVAIPNPTKPAFVSPSFSGFVYPKDGALSTSSTASQIPLSGSIFPGCNS

Protein Length: 138

Fln nts: TTGATTTGGAAAAATAACTACAGATTTTGGGAGAAACCAAGTTAAATTGGGACACACTCTTATATTTCCGAATTAATTATCTAAATGCAGGGATGGAGACTGTGGAATGGTGGAAATCTGCTGGATATGATCGATCCGACAATAGTTGGATGTTGCCCTCAAGAACAAGCATTGAGATGCATTCGTGTGGGTCTTCTGTGCGTACAGGCCGATGTGTCATATCGCCCAGCAATGCCTGATGTTGTTCTCATGCTGTCCAACAATTCAGTGGCCATACCGAATCCCACGAAGCCTGCTTTTGTTAGTCCTAGCTTTAGCGGGTTTGTATATCCAAAAGATGGAGCTCTTTCCACGTCATCTACTGCTTCACAAATCCCACTATCAGGCTCAATTTTCCCTGGATGCAATTCT

Fln Alignment:

uma_euler_7989___GWRLWNGGNLLDMIDPTIVGCCPQEQALRCIRVGLLCVQADVSYRPAMPDVVLMLSNNSVAIPNPTKPAFVSPSFSGFVYPKDGALSTSSTASQIPLSGSIFPGCNS
A9NQB9_______________GWRLCNGENLLNMIDPTIVGCCPQEQALRCIQVGLLCVQADVVNRPAMSDVVLMLSANSMGIPNPTKPAFVSLSFSGDACTKDGAVSTSSATSQIQRSNLTFSGCDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain