SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91066

Length: 2492 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene91066
CAGATTCGTAAGACTTGCAGAGCATTTATTATTGAAATGGCGTTTCGAGATTATGTTGATGAATCCAAGTTTAGTTCTACCTGTCACGCGGCCAAGATCGAGTCTCATTAGTGTTGCTGTCTTTAAGTTTTTGGGTTTATCTTAAAGCTTGATAGCCCGAGCTAATAGTTTCTGCATATCCGCCATTGCTGGCAGGTTTCTTCGGCATCCTGAAAATCTGTAAAGAAAATGGAGACAATAAGTTTATTCAAGTCCTTTTACTCAGTTCGGGCCCCAGCTGTCGTGGCCACTTCGAGTGGCAATAACCCAAAGTCCTGCCATTCTAGTGGACTGAGCTATCCACTTAGAGGGTCAGCCAAAAGTGTCAGGAGCGCAAGCTGCAGCTTTTTGAGTGGAAGTGAGACCGATGCCTTCAGACATGCTGTTCGCGCTATTGGTAAGTCAAAATCTGGTGGCGGAGCCCTGAGCTGTACATGCGATCACCAGAACCAGAAGATCCTCATTGCAAACAGGGGGGAAATCGCTGTTCGCGTGATTCGGACAGCCCATGAAATGGGCATCCCATGTGTGGCAGTACACTCTACAGTAGATAGGCAAGCGCTCCATGTCCAAATTGCAGATGAGGCCGTGTGCATTGGAGAGGCACCAAGCAGTCAATCATATTTAGTGATACCAAATATTGTAGCAGCTGCAGTGAGCCGTGGTTGTACCATGTTACACCCTGGATATGGTTTTCTTTCTGAAAATGCTAGTTTTGTGGACATCTGTAAAGAGCATGGAATCAACTTTATTGGGCCAAATCCACATAGCATTCGTGTTATGGGTGACAAAGCAACAGCTCGGGAAACAATGAAAAAGGCTGGGGTTCCAACTGTACCAGGAAGTGATGGGATTTTAGAGTCAACAGAAGAGGCTATAAAAGTTGCTAATGAGATTGGGTTTCCAGTAATGATCAAGGCAACTGCAGGTGGTGGAGGTCGTGGAATGCGTTTGGCCAATGAGCCAGGAGAGTTTGTAAAATTATTACAGCAAGCCAAGAGTGAGGCAGGTGCAGCCTTTGGGAATGACGGCGTCTATTTGGAGAAGTACATAAAAAACCCTAGACATATTGAGTTCCAGATTCTTGCTGACAAACATGGTAATTGTATCCATTTTGGAGAGCGTGACTGCAGTATCCAGCGGAGGAATCAAAAGCTTCTAGAAGAAGCACCGTCTCCTGCTTTGACCCCCAAGCTAAGAAATGCCATGGGAAATGCTGCAATTGCAGCCGCTTTATCTATAGGATATATTGGGGTTGGCACCATTGAATTTCTTCTTGATGAAAGTGGTGACTTCTACTTCATGGAGATGAACACTAGGATCCAGGTGGAACATCCAATCACCGAAATGATTTCCTCAACTGATTTAATTGAGGAACAAATTCGTGTTGCATTAGGAGAGAAACTTCGGATGAAACAGGAAGATGTGGTGTTGAGAGGACACTCCATTGAGTGCAGAATCAATGCTGAGGATGCTTTCCAAGGATTTCGCCCAGGGCCAGGTAGGATAACAGGTTACTTGCCACCAGGAGGTCCCTTTGTGCGAATAGATAGCCACATTTATTCCGATTATGTAGTTCCTCCGAGCTATGACTCTCTATTAGGAAAGCTTATTGTCTGGGCACCTACTAGAGAGAAGGCAATCACGCGTATGCGAAGAGCTCTTAATGAAACTATTATTGTAGGAGTTCCTACCACAATTGACTATCATAAACTTATTCTAGAAACTCAGGACTTCAAGGATGGAAAAATTGATACAGCTTTCATTCCCAAACACGAAGAGGAGTTGGCTGCGCCTCATGATGTTGTGCAATTAACTGTACCCAATAAGAGTGTTGCTAAAGCAATTGCTTGAATTCAAAATTTGATGATGTGAGTTTAGTTATCAGGATTCGATTGCTTTCGCCACAGCAACAGGCCTTCAGAATCGTGGAGTCGCTCCTAATATTTTAGCCTATGATGGTGTATGCAGAAGCAAGTTAGTTAATAATTGACAAGCTTGTTTGGTTTTAAAGCCAATCTTGACATTGTTTAACTCCTGTGGTCGCATTTTTATTCCAGAGGTTATTATGTATTTGATCCAATATCATTGTTCCCGAAAATATGGCTTTCATGGCCCTATATGTTATACAGCATTCCAATCATGAATAAATTGAAACGATCCATTTATTTTAGTCAACTTTTGAAATCATTTATCAAAGAAACGTAGAAATCTACTGTTATTCATGACCTTATCTCTGCTAAAGAAGACTAATCCACAACAATATGAAAAGAAATGTGGGTAATTTGTTATGAAACGCCAACCAGCCATGTACCTTGATATTGTGCTCCATTATATAAGCATATTTGTGCATCATTTACGAAAAAGTTGCGTGCCAATATACTAATATTGTCAGATGAACGTCGACATCATTTGAATTAGAAGCCAATGAGAAATTTATCCACTTTTATACT

Ace file of the UniGene sp_v2.0_unigene91066 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	chloroplast biotin carboxylase [Gossypium hirsutum]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	biotin carboxylase precursor	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	Acetyl-CoA carboxylase, biotin carboxylase	IPR004549	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3	Biotin carboxylation domain	IPR011764	-	-
Sma3	Biotin carboxylase, C-terminal	IPR005482	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, N-terminal	IPR005481	-	-
Sma3		IPR013817	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR39

Fln msg: Overlapping hits, possible frame ERROR between 865 and 850,

Fln protein: MVFFLKMLVLWTSVKSMESTLLGQIHIAFVLWVTKQQLGKxxxxxxxPTVPGSDGILESTEEAIKVANEIGFPVMIKATAGGGGRGMRLANEPGEFVKLLQQAKSEAGAAFGNDGVYLEKYIKNPRHIEFQILADKHGNCIHFGERDCSIQRRNQKLLEEAPSPALTPKLRNAMGNAAIAAALSIGYIGVGTIEFLLDESGDFYFMEMNTRIQVEHPITEMISSTDLIEEQIRVALGEKLRMKQEDVVLRGHSIECRINAEDAFQGFRPGPGRITGYLPPGGPFVRIDSHIYSDYVVPPSYDSLLGKLIVWAPTREKAITRMRRALNETIIVGVPTTIDYHKLILETQDFKDGKIDTAFIPKHEEELAAPHDVVQLTVPNKSVAKAIA*

Protein Length: 390

Fln nts: CAGATTCGTAAGACTTGCAGAGCATTTATTATTGAAATGGCGTTTCGAGATTATGTTGATGAATCCAAGTTTAGTTCTACCTGTCACGCGGCCAAGATCGAGTCTCATTAGTGTTGCTGTCTTTAAGTTTTTGGGTTTATCTTAAAGCTTGATAGCCCGAGCTAATAGTTTCTGCATATCCGCCATTGCTGGCAGGTTTCTTCGGCATCCTGAAAATCTGTAAAGAAAATGGAGACAATAAGTTTATTCAAGTCCTTTTACTCAGTTCGGGCCCCAGCTGTCGTGGCCACTTCGAGTGGCAATAACCCAAAGTCCTGCCATTCTAGTGGACTGAGCTATCCACTTAGAGGGTCAGCCAAAAGTGTCAGGAGCGCAAGCTGCAGCTTTTTGAGTGGAAGTGAGACCGATGCCTTCAGACATGCTGTTCGCGCTATTGGTAAGTCAAAATCTGGTGGCGGAGCCCTGAGCTGTACATGCGATCACCAGAACCAGAAGATCCTCATTGCAAACAGGGGGGAAATCGCTGTTCGCGTGATTCGGACAGCCCATGAAATGGGCATCCCATGTGTGGCAGTACACTCTACAGTAGATAGGCAAGCGCTCCATGTCCAAATTGCAGATGAGGCCGTGTGCATTGGAGAGGCACCAAGCAGTCAATCATATTTAGTGATACCAAATATTGTAGCAGCTGCAGTGAGCCGTGGTTGTACCATGTTACACCCTGGAT_-_ATGGTTTTCTTTCTGAAAATGCTAGTTTTGTGGACATCTGTAAAGAGCATGGAATCAACTTTATTGGGCCAAATCCACATAGCATTCGTGTTATGGGTGACAAAGCAACAGCTCGGGAAAxxxxxxxxxxxxxxxxxxxxxCCAACTGTACCAGGAAGTGATGGGATTTTAGAGTCAACAGAAGAGGCTATAAAAGTTGCTAATGAGATTGGGTTTCCAGTAATGATCAAGGCAACTGCAGGTGGTGGAGGTCGTGGAATGCGTTTGGCCAATGAGCCAGGAGAGTTTGTAAAATTATTACAGCAAGCCAAGAGTGAGGCAGGTGCAGCCTTTGGGAATGACGGCGTCTATTTGGAGAAGTACATAAAAAACCCTAGACATATTGAGTTCCAGATTCTTGCTGACAAACATGGTAATTGTATCCATTTTGGAGAGCGTGACTGCAGTATCCAGCGGAGGAATCAAAAGCTTCTAGAAGAAGCACCGTCTCCTGCTTTGACCCCCAAGCTAAGAAATGCCATGGGAAATGCTGCAATTGCAGCCGCTTTATCTATAGGATATATTGGGGTTGGCACCATTGAATTTCTTCTTGATGAAAGTGGTGACTTCTACTTCATGGAGATGAACACTAGGATCCAGGTGGAACATCCAATCACCGAAATGATTTCCTCAACTGATTTAATTGAGGAACAAATTCGTGTTGCATTAGGAGAGAAACTTCGGATGAAACAGGAAGATGTGGTGTTGAGAGGACACTCCATTGAGTGCAGAATCAATGCTGAGGATGCTTTCCAAGGATTTCGCCCAGGGCCAGGTAGGATAACAGGTTACTTGCCACCAGGAGGTCCCTTTGTGCGAATAGATAGCCACATTTATTCCGATTATGTAGTTCCTCCGAGCTATGACTCTCTATTAGGAAAGCTTATTGTCTGGGCACCTACTAGAGAGAAGGCAATCACGCGTATGCGAAGAGCTCTTAATGAAACTATTATTGTAGGAGTTCCTACCACAATTGACTATCATAAACTTATTCTAGAAACTCAGGACTTCAAGGATGGAAAAATTGATACAGCTTTCATTCCCAAACACGAAGAGGAGTTGGCTGCGCCTCATGATGTTGTGCAATTAACTGTACCCAATAAGAGTGTTGCTAAAGCAATTGCTTGA___ATTCAAAATTTGATGATGTGAGTTTAGTTATCAGGATTCGATTGCTTTCGCCACAGCAACAGGCCTTCAGAATCGTGGAGTCGCTCCTAATATTTTAGCCTATGATGGTGTATGCAGAAGCAAGTTAGTTAATAATTGACAAGCTTGTTTGGTTTTAAAGCCAATCTTGACATTGTTTAACTCCTGTGGTCGCATTTTTATTCCAGAGGTTATTATGTATTTGATCCAATATCATTGTTCCCGAAAATATGGCTTTCATGGCCCTATATGTTATACAGCATTCCAATCATGAATAAATTGAAACGATCCATTTATTTTAGTCAACTTTTGAAATCATTTATCAAAGAAACGTAGAAATCTACTGTTATTCATGACCTTATCTCTGCTAAAGAAGACTAATCCACAACAATATGAAAAGAAATGTGGGTAATTTGTTATGAAACGCCAACCAGCCATGTACCTTGATATTGTGCTCCATTATATAAGCATATTTGTGCATCATTTACGAAAAAGTTGCGTGCCAATATACTAATATTGTCAGATGAACGTCGACATCATTTGAATTAGAAGCCAATGAGAAATTTATCCACTTTTATACT

Fln Alignment:

uma_euler_2169___MVFFLKMLVLWTSVKSMESTLLGQIHIAFVLWVTKQQLGKQxxxxxVPTVPGSDGILESTEEAIKVANEIGFPVMIKATAGGGGRGMRLANEPGEFVKLLQQAKSEAGAAFGNDGVYLEKYIKNPRHIEFQILADKHGNCIHFGERDCSIQRRNQKLLEEAPSPALTPKLRNXXXXXXXXXXXXXXXXGVGTIEFLLDESGDFYFMEMNTRIQVEHPITEMISSTDLIEEQIRVALGEKLRMKQEDVVLRGHSIECRINAEDAFQGFRPGPGRITGYLPPGGPFVRIDSHIYSDYVVPPSYDSLLGKLIVWAPTREKAITRMRRALNETIIVGVPTTIDYHKLILETQDFKDGKIDTAFIPKHEEELAAPHDVVQLTVPNKSVAKAIA
B8LR39_______________MVFFLKMLVLWTSVKNMESTLLGQVQTAFVLWVTKQQLGKQxxxxxVPTVPGSDGILDSTEEAITVANQIGFPVMIKATAGGGGRGMRLANEPGEFVKLLQQAKSEAGAAFGNDGVYLEKYIKNPRHIEFQILADKHGNCIHFGERDCSIQRRNQKLLEEAPSPALTPKLRNAMGDAAVAAALSIGYVGVGTVEFLLDESGDFYFMEMNTRIQVEHPITEMISSTDLIEEQIRVALGEKLRMKQEDVVLRGHSIECRINAEDAFQGFRPGPGRITGYLPPGGPFVRMDSHIYSDYVVPPSYDSLLGKLIVWAPTREKAIARMQRALNETIIVGIPTTIDYHKLILETQDFKDGKIDTAFIPKHEEELASPQDAVQLTIPTKSVAKAIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain