SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene90516

Length: 442 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene90516
GGTTGCTACCGCGAACAGTTTTCCCAATTTCACAGGTCTCCTGTGGCTTCCACGAGCTATGTCCTGGCCATTGCAGATCACGTGAATGAATTTAGAATCCAGACTGTTTCAGATGATTTCTTTGCGGCTTTCCATCAGACGAGTTGGCATTTTTTTGCCTTGGATGCTTCACAAGATCTCAAAGTTCTGTCTGTATAACAAACTCATCATTGGATTATTAGCTGGTCTAGTCCCCTTTGAATGAGCTGCTTTTCTAAAACTAGATATGCTTTTGTAGAGATATGCCAAGCAACTAGAAGTTCCTCTCCTTATGGATCAACATGAATAACGGCTAGTACAATACTAATTTGGTAATACGAATAGCACAAATACTGCTTCTATGGTATGAATAACAGTGTTATTTATATTGTTTAACTAGAATTGTAATACAAGGTTATCTAGA

Ace file of the UniGene sp_v2.0_unigene90516 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	sensitivity to red light reduced protein 1 [Arabidopsis thaliana]	-	-	4.0e-06	43%
FL-Next	sp=Protein SENSITIVITY TO RED LIGHT REDUCED 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	43%
Blast2go	protein sensitivity to red light	-	-	9.96123e-09	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	red or far-red light signaling pathway	GO:0010017	Biological Process	9.96123e-09	64%
Blast2go	circadian rhythm	GO:0007623	Biological Process	9.96123e-09	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8GWZ6

Fln msg: your sequence is shorter than subject: 66 - 275

Fln protein: GCYREQFSQFHRSPVASTSYVLAIADHVNEFRIQTVSDDFFAAFHQTSWHFFALDASQDLKVLSV*

Protein Length: 67

Fln nts: GGTTGCTACCGCGAACAGTTTTCCCAATTTCACAGGTCTCCTGTGGCTTCCACGAGCTATGTCCTGGCCATTGCAGATCACGTGAATGAATTTAGAATCCAGACTGTTTCAGATGATTTCTTTGCGGCTTTCCATCAGACGAGTTGGCATTTTTTTGCCTTGGATGCTTCACAAGATCTCAAAGTTCTGTCTGTATAA___CAAACTCATCATTGGATTATTAGCTGGTCTAGTCCCCTTTGAATGAGCTGCTTTTCTAAAACTAGATATGCTTTTGTAGAGATATGCCAAGCAACTAGAAGTTCCTCTCCTTATGGATCAACATGAATAACGGCTAGTACAATACTAATTTGGTAATACGAATAGCACAAATACTGCTTCTATGGTATGAATAACAGTGTTATTTATATTGTTTAACTAGAATTGTAATACAAGGTTATCTAGA

Fln Alignment:

uagpf_euler_27819___YREQFSQFHRSPVASTSYVLAIADHVNEFRIQTVSDDFFAAFHQTSWHFFALDASQDL
Q8GWZ6_______________YEEQVS-FDAEVICATKRIIAAQRVTSEFAIETESDDYFAAFHDSSWHFFSSGIDSEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain