SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86473

Length: 1270 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene86473 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 2, putative n=1 Tax=Ricinus communis RepID=B9SCJ0_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	probable xyloglucan endotransglucosylase hydrolase protein 32-like	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9H8

Fln msg: Separated hits, possible frame ERROR between 504 and 581, W2: There is no M at the beginning, your sequence is longer than subject: 332 - 193

Fln protein: IFTLLNSIIPVHGESEKHIPVTSKFQTINFYNGFSNLWGPQHQQVSEDESSTTIWLDSSSGSGFKSLEAYKSGFFSAAIKLQAGYTAGVIAALYLSNNQEYPGHHDEIDIEFLGTTPGKPYTLQTNVYINGTGDGQVLTGRELKFHLWFDPTEDFHNYSLLWTPSYIxxxxxxxxxxxxxxxxxxxxxxxxxxxYGSFYVDDIAIRKYPRRISSTYPLRPLWVYGSIWDASSWATENGKYRADYRYQPFVAKFSKFILSGCPVSDSTCSATFSNSLISTGTGGLTSQERSRMKSIQRNNLVYNYCKDRERYPTRLPECGKRYAPSLINGND*

Protein Length: 333

Fln nts: ATATTCACTCTTCTAAATTCCATTATCCCTGTACATGGAGAGTCTGAGAAGCACATTCCTGTGACCTCCAAGTTCCAGACCATAAACTTTTATAATGGCTTTTCTAATCTCTGGGGTCCTCAGCATCAGCAAGTGTCAGAGGATGAGTCCTCTACCACAATTTGGCTTGACAGCTCTTCAGGTAGTGGATTCAAGTCTTTGGAGGCCTATAAGTCCGGATTCTTCAGTGCTGCTATTAAGCTACAGGCAGGTTATACAGCTGGAGTCATCGCAGCTCTCTATCTCTCCAATAACCAGGAGTACCCAGGTCACCATGACGAAATAGACATTGAGTTCCTGGGGACAACACCAGGAAAACCCTACACCTTACAGACCAATGTTTACATAAATGGAACAGGGGATGGGCAGGTTCTCACAGGCAGGGAGTTGAAGTTCCATCTCTGGTTTGACCCAACTGAAGACTTCCATAACTACAGCCTTCTCTGGACTCCAAGTTATATCATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTATGGCAGCTTCTATGTAGATGATATTGCTATCCGAAAGTACCCAAGAAGAATTTCATCTACTTATCCATTGAGGCCACTTTGGGTATATGGATCAATATGGGATGCTTCCTCTTGGGCTACTGAAAATGGCAAATACAGAGCAGATTACAGATATCAGCCATTTGTTGCTAAGTTCTCTAAGTTCATTCTCAGTGGCTGCCCTGTTTCAGACTCCACATGCTCAGCCACATTCTCCAATTCTCTCATTTCAACTGGAACAGGAGGCCTAACGAGCCAAGAGAGATCGAGGATGAAGTCGATTCAGAGAAACAATTTGGTTTACAACTACTGCAAGGACCGAGAACGCTATCCCACTCGCCTGCCTGAGTGTGGGAAACGCTATGCTCCCAGCCTAATTAATGGGAATGATTAAACACATAATCACCACTTGATTATCAAGATGGTTCCCTAGATATAAATTTGTGAGAGACTAGAGTTTGAATCTTGAAAACCAGTCTCTGTTTATTTATGGCCATCTATAATATAGGCCATTGAAGAGTGCTTCTGTAGGGGTGTGTAAGGAAATTTCCATTGCAGCTGGTGAAATAAATTTGCAGCTCATGGAGTACAGATGCCCAAAGCTCCATAGGAGTTGGGTTGAAATAGTTGATTTCCTTATTGTTGGTAATTGCTTGGAGGGCTATGTAAA

Fln Alignment:

mc_euler_6788___IEFLGTTPGKPYTLQTNVYINGTGDGQVLTGRELKFHLWFDPTEDFHNYSLLWTPSYIMxxxxxxxxxxxxxxxxxxxxxxxxxxYGSFYVDDIAIRKYPRRISSTYPLRPLWVYGSIWDASSWATENGKYRADYRYQPFVAKFSKFILSGCPVSDSTCSATFSNSLISTGTGGLTSQERSRMKSIQRNNLVYNYCKDRERYPTRLPECGKRYAPSLINGND
D5A9H8_______________MEFLGTTPGKPYTLQTNVYINGTGDAQVLTGRELKFHLWFDPTEDFHNYSILWTPTYIIxxxxxxxxxxxxxxxxxxxxxxxxxxYIIFYVDDIAIRKYPRRVSSTYPLRPLWVYGTIWDASSWATENGKYRADYRYQPFVAKFSRFILSGCPAPDSTCSAAFSDSLISTGTGGLTSQERTRMKSIQRNNLVYNYCKDRERYPTRLPECGKRYAPTLIDWND

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain