SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86206

Length: 445 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene86206
CAATTCCGTTATTCATATTGGAACAGCAGCCAGAGCTACGTGCTAACCAAGGGGTGGAGCCGTTTTGTGAAGGATAAGAGATTGGAAACAGGTGACATTGTTTCGTTTCACAAAGGATTTGCTCAGACTGATCACTTCTACATCAGCTGGAGTCGCAGGCCGTCGGGTCAACCCGGACTCGGTTTCAATCCCCACAACCAAAAATCCAAGGCTGAAGTGGTGTATCCTGTCAAGAGGCCGTCGTTCTTGAATCTTTTCAATTCCAGAGGCATTAGTAATGCAGCTCGATGGATGCCCGTCTTCTCGACCAGTTCGAGTAATCCCAACGCCATTACGCAATTCAGTTCCCATCCCTTCTCCTCGCCAATCAGAAAAAGCGGTCATATGGATGCCCTGAGGTCTCAGTGCTCTGCAGCCCCCTTTAACAGCGAGATTCCTTTTTATT

Ace file of the UniGene sp_v2.0_unigene86206 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RYX9_RICCO	-	-	9.0e-18	49%
FL-Next	sp=B3 domain-containing transcription factor NGA2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Blast2go	b3 domain-containing protein	-	-	2.79808e-20	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	leaf development	GO:0048366	Biological Process	2.79808e-20	74%
Blast2go	flower development	GO:0009908	Biological Process	2.79808e-20	74%
Blast2go	response to karrikin	GO:0080167	Biological Process	2.79808e-20	74%

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Xyloglucan fucosyltransferase	IPR004938	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M268

Fln msg: Distance to subject end: 76 aas, your sequence is shorter than subject: 148 - 299

Fln protein: QFRYSYWNSSQSYVLTKGWSRFVKDKRLETGDIVSFHKGFAQTDHFYISWSRRPSGQPGLGFNPHNQKSKAEVVYPVKRPSFLNLFNSRGISNAARWMPVFSTSSSNPNAITQFSSHPFSSPIRKSGHMDALRSQCSAAPFNSEIPFY

Protein Length: 149

Fln nts: CAATTCCGTTATTCATATTGGAACAGCAGCCAGAGCTACGTGCTAACCAAGGGGTGGAGCCGTTTTGTGAAGGATAAGAGATTGGAAACAGGTGACATTGTTTCGTTTCACAAAGGATTTGCTCAGACTGATCACTTCTACATCAGCTGGAGTCGCAGGCCGTCGGGTCAACCCGGACTCGGTTTCAATCCCCACAACCAAAAATCCAAGGCTGAAGTGGTGTATCCTGTCAAGAGGCCGTCGTTCTTGAATCTTTTCAATTCCAGAGGCATTAGTAATGCAGCTCGATGGATGCCCGTCTTCTCGACCAGTTCGAGTAATCCCAACGCCATTACGCAATTCAGTTCCCATCCCTTCTCCTCGCCAATCAGAAAAAGCGGTCATATGGATGCCCTGAGGTCTCAGTGCTCTGCAGCCCCCTTTAACAGCGAGATTCCTTTTTATT

Fln Alignment:

mc_euler_16___QFRYSYWNSSQSYVLTKGWSRFVKDKRLETGDIVSFHKGFAQTDHFYISWSRRP
Q9M268_______________RFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSCNKDKLYIDWRRRP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain