SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85931

Length: 348 nt

UniGene Fasta

>sp_v2.0_unigene85931
GCGATATATTGTTTATGAATTTGTAGCCAACGGTCCTTTGGACAGATGGCTACATCACCTGCCAAAAGGAGGTAGGAGTTTGGATTGGAGGATGCGAATGCGAGTTGCGACTACACTTGCTCAGAGACTAATGTTTCAATTGTTTTTAAATCGGCACCTGGTATTCTACTTAGACGTAACGGGCCTGAATTTTGGGAAAATAGATTGAAGCATTTCACAAGTTTTGGGCTCCTCGAAGATGACATCAAGGACCTTGTTAGGAGGCGCCCATGTGTATTAAGTGCTTCCATGGATAAAGTGCAGAAAAACATGGACTTTTTGATGCATACTGTAGGGCTTCCTTCAAAG

Ace file of the UniGene sp_v2.0_unigene85931

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase-like protein / C-type lectin domain-containing protein [Arabidopsis thaliana] sp\|Q9C823.1\|Y1523_ARATH RecName: Full=C-type lectin receptor-like tyrosine-protein kinase At1g52310; Flags: Precursor gb\|AAG51547.1\|AC037424_12 protein kinase, pu	-	-	1.0e-14	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	c-type lectin receptor-like tyrosine-protein kinase at1g52310-like	-	-	3.31133e-23	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	3.31133e-23	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	C-type lectin	IPR001304	-	-
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	C-type lectin-like	IPR016186	-	-
Sma3		IPR017442	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P166

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 24 aas, your sequence is shorter than subject: 116 - 282

Fln protein: AIYCL*ICSQRSFGQMATSPAKRR*EFGLEDANASCDYTCSETNVSIVFKSAPGILLRRNGPEFWENRLKHFTSFGLLEDDIKDLVRRRPCVLSASMDKVQKNMDFLMHTVGLPSK

Protein Length: 117

Fln nts: GCGATATATTGTTTATGAATTTGTAGCCAACGGTCCTTTGGACAGATGGCTACATCACCTGCCAAAAGGAGGTAGGAGTTTGGATTGGAGGATGCGAATGCGAGTTGCGACTACACTTGCTCAGAGACTAATGTTTCAATTGTTTTTAAATCGGCACCTGGTATTCTACTTAGACGTAACGGGCCTGAATTTTGGGAAAATAGATTGAAGCATTTCACAAGTTTTGGGCTCCTCGAAGATGACATCAAGGACCTTGTTAGGAGGCGCCCATGTGTATTAAGTGCTTCCATGGATAAAGTGCAGAAAAACATGGACTTTTTGATGCATACTGTAGGGCTTCCTTCAAAG

Fln Alignment:

biogeco3_euler_10174___SETNVSIVFKSAPGILLRRNGPEFWENRLKHFTSFGLLEDDIKDLVRRRPCVLSASMDKVQKNMDF
A9P166_______________SEANVSNVFKWAPHILLKSNGPESWENKLKHLTSFGLLEDEIMELVRRHPLILNTSMHKLQKNMTF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain