SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85905

Length: 345 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene85905
AATGTAGGTTTTTAACGCTCGTTTTTAGTGGTAAAAGTAGGTGCAGGGAATTCGATCCTGTGACATGGAATCACGAGTAGGCAATAAGTACAAACTGGGGCGCAAAATTGGCAGCGGCTCCTTCGGCGAGATCTACTTAGGAACCAATGACCAAACCAACGAGGAAGTCGCCATTAAACTGGAAAATGCGAAGACTAAACACCCACAGCTTTTATATGAATCTATGCTTTATAGGGTCCTACAAGCAGGAACGGGAATTCCAAACATAAGATGGTTTGGTGTTGAAGGAGACTATAATGTCCTTGTGATGGACTTATTAGGGCCTAGCCTTGAAGATCTTTTTAA

Ace file of the UniGene sp_v2.0_unigene85905 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Casein kinase n=1 Tax=Beta vulgaris RepID=A2I5G0_BETVU	-	-	2.00386e-43	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	0.0	93%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Domain of unknown function DUF71, ATP-binding domain	IPR002761	-	-
Sma3	YjgF/Yer057p/UK114 family	IPR006175	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Endoribonuclease L-PSP/chorismate mutase-like	IPR013813	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR36

Fln msg: Distance to subject end: 385 aas, your sequence is shorter than subject: 93 - 479

Fln protein: MESRVGNKYKLGRKIGSGSFGEIYLGTNDQTNEEVAIKLENAKTKHPQLLYESMLYRVLQAGTGIPNIRWFGVEGDYNVLVMDLLGPSLEDLF

Protein Length: 94

Fln nts: AATGTAGGTTTTTAACGCTCGTTTTTAGTGGTAAAAGTAGGTGCAGGGAATTCGATCCTGTGAC_-_ATGGAATCACGAGTAGGCAATAAGTACAAACTGGGGCGCAAAATTGGCAGCGGCTCCTTCGGCGAGATCTACTTAGGAACCAATGACCAAACCAACGAGGAAGTCGCCATTAAACTGGAAAATGCGAAGACTAAACACCCACAGCTTTTATATGAATCTATGCTTTATAGGGTCCTACAAGCAGGAACGGGAATTCCAAACATAAGATGGTTTGGTGTTGAAGGAGACTATAATGTCCTTGTGATGGACTTATTAGGGCCTAGCCTTGAAGATCTTTTTAA

Fln Alignment:

biogeco3_euler_9016___MESRVGNKYKLGRKIGSGSFGEIYLGTNDQTNEEVAIKLENAKTKHPQLLYESMLYRVLQAGTGIPNIRWFGVEGDYNVLVMDLLGPSLEDLF
B8LR36_______________METRVGNKYRLGRKIGSGSFGEIYLGTNVQTNEEVAIKLESVRTKHPQLLYESKLYRILQGGTGIPNIRWFGVEGEYNVLVMDLLGPSLEDLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain