SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85769

Length: 295 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene85769
AATGTCTGATTCATGTTCTGTTTCACAAACTAATTCTTTGCAACAAGAAGCATATGCATCAACTAGTCACCAGCAAGATATTGATCATCCAGGGAGCTCTCCCAAGCAGCTGTTAGTTCGATGTGCAACTGCAATTTGTGAAGCCTTCAAGGATGAGCAGAAGGTTCATATAATAGATTTTGATGTTGGGCAGGGCAGTCAGTACATAAGCCTCTTAAAGGCCCTTGCAGAAAGGCCTGGTGGGCCTCCACATTTGCGCATAACAGCAGTAGATGATCCTGAATCTGTAAGGCAT

Ace file of the UniGene sp_v2.0_unigene85769 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	scarecrow-like transcription factor PAT1 [Arabidopsis thaliana] ref\|NP_974903.1\| scarecrow-like transcription factor PAT1 [Arabidopsis thaliana] sp\|Q9LDL7.1\|PAT1_ARATH RecName: Full=Scarecrow-like transcription factor PAT1; AltName: Full=GRAS family prote	-	-	2.0e-12	61%
FL-Next	tr=SCARECROW; Pinus sylvestris (Scots pine).	-	-	0.0	61%
Blast2go	chitin-inducible gibberellin-responsive	-	-	1.42028e-17	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor GRAS	IPR005202	-	0.0	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q0MRQ2

Fln msg: Distance to subject end: 214 aas, your sequence is shorter than subject: 98 - 842

Fln protein: MSDSCSVSQTNSLQQEAYASTSHQQDIDHPGSSPKQLLVRCATAICEAFKDEQKVHIIDFDVGQGSQYISLLKALAERPGGPPHLRITAVDDPESVRH

Protein Length: 99

Fln nts: AATGTCTGATTCATGTTCTGTTTCACAAACTAATTCTTTGCAACAAGAAGCATATGCATCAACTAGTCACCAGCAAGATATTGATCATCCAGGGAGCTCTCCCAAGCAGCTGTTAGTTCGATGTGCAACTGCAATTTGTGAAGCCTTCAAGGATGAGCAGAAGGTTCATATAATAGATTTTGATGTTGGGCAGGGCAGTCAGTACATAAGCCTCTTAAAGGCCCTTGCAGAAAGGCCTGGTGGGCCTCCACATTTGCGCATAACAGCAGTAGATGATCCTGAATCTGTAAGGCAT

Fln Alignment:

biogeco3_euler_4301___AICEAFKDEQKVHIIDFDVGQGSQYISLLKALAERPGGPPHLRITAV
Q0MRQ2_______________AIQEAFEREQRVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRITGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain