SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85679

Length: 472 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene85679
TTTTCAAGAAGGTGGATTGGATGAAGCGCTTGCAGGATTCTGAAATAGAACAGTATACATACAGGTCGTTTCCCCGTGAGTTCATTTGGGAATGTGGAGACTCTACGCCTGAGGGGCACCTGCCTCTGACCAATGCTCTCAGAGGCACCCAGCTTCTTGCCAGCATTCTGCAACATCCGGCCTTTGATTTTGTTGAGGAGGAGGATACACTGAAGGTTGGGGGAATCATTGATAACATACGGGATACCAAACAGAGCCGAGGTTCTGTAGTCTACATGCCAGACTATAAGATCTGAGCCTTAGAATGTAAGTATTTACCTCCTCTCATTTACTTGTTGGTCTGTGCCACCGTTATCTAATATAATGTTTATCATCATAACTCCCAAGGTTGCATTATCTATTATGTTATGTTCACATATTAAATCAGTTATGGATCCCTGGCTCTCTGTTTAATATAATGATCAGTACCTTT

Ace file of the UniGene sp_v2.0_unigene85679 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	tetrapyrrole-binding chloroplastic-like	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast-nucleus signaling pathway	GO:0010019	Biological Process	69%
Blast2go	chlorophyll biosynthetic process	GO:0015995	Biological Process	69%
Blast2go	positive regulation of catalytic activity	GO:0043085	Biological Process	69%
Blast2go	tetrapyrrole binding	GO:0046906	Molecular Function	69%
Blast2go	enzyme binding	GO:0019899	Molecular Function	69%
Blast2go	chloroplast	GO:0009507	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	GUN4-like	IPR008629	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXG2

Fln msg: your sequence is shorter than subject: 98 - 269

Fln protein: FKKVDWMKRLQDSEIEQYTYRSFPREFIWECGDSTPEGHLPLTNALRGTQLLASILQHPAFDFVEEEDTLKVGGIIDNIRDTKQSRGSVVYMPDYKI*

Protein Length: 99

Fln nts: TTTTCAAGAAGGTGGATTGGATGAAGCGCTTGCAGGATTCTGAAATAGAACAGTATACATACAGGTCGTTTCCCCGTGAGTTCATTTGGGAATGTGGAGACTCTACGCCTGAGGGGCACCTGCCTCTGACCAATGCTCTCAGAGGCACCCAGCTTCTTGCCAGCATTCTGCAACATCCGGCCTTTGATTTTGTTGAGGAGGAGGATACACTGAAGGTTGGGGGAATCATTGATAACATACGGGATACCAAACAGAGCCGAGGTTCTGTAGTCTACATGCCAGACTATAAGATCTGA___GCCTTAGAATGTAAGTATTTACCTCCTCTCATTTACTTGTTGGTCTGTGCCACCGTTATCTAATATAATGTTTATCATCATAACTCCCAAGGTTGCATTATCTATTATGTTATGTTCACATATTAAATCAGTTATGGATCCCTGGCTCTCTGTTTAATATAATGATCAGTACCTTT

Fln Alignment:

biogeco3_euler_1388___FKKVDWMKRLQDSEIEQYTYRSFPREFIWECGDSTPEGHLPLTNALRGTQLLASILQHPAFDFVEEEDTLKVGGIIDNIRDTKQSRGSVVYMPDYKI
A9NXG2_______________FKKVAWMKLLQGSEIEQYTYRSFPREFMWEFGDSTPEGHLPLTNALRGTQLLSSILQHPAFDFVEEEDTLKVGGIIENILDTKQSRGSVNYMPEYKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain