SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85472

Length: 890 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene85472 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative endomembrane protein EMP70 precusor isolog [Arabidopsis thaliana]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	transmembrane 9 superfamily protein member	-	-	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	94%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	94%

Source	InterPros	Term	Type	Identity
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Ribosomal protein L13	IPR005822	-	-
Sma3	Ribosomal protein L13, bacterial-type	IPR005823	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKM1

Fln msg: Distance to subject end: 122 aas, your sequence is shorter than subject: 296 - 585

Fln protein: HVNLTQENPKPLIAGKTLELTYSVHWVETNITFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREEDDLESLERDVSEESGWKLVHGDVFRTPRNLVLLSALVGTGAQLAMLVLLVIVLAMVGMLYVGRGAIVTTFIVCYALTSFISGYVSGGLYSRNDGKHWVKSMILTASLFPFLCFGIGFTLNIVAIFYRSLAAIPFGTMVVVFIIWAFISFPLALLGTVVGRNWSRASDNPCRVKSIPRPIPEKKWYLTPSVVSVMGGLLPFGSIFIEMY

Protein Length: 297

Fln nts: CATGTCAACCTCACTCAGGAGAATCCAAAGCCGCTTATTGCTGGGAAGACACTAGAACTTACCTATTCAGTCCATTGGGTCGAGACCAACATAACCTTTGCCAGGCGTTTTGATGTCTACTTAGACTATCCTTTCTTTGAACATCAGATCCATTGGTTCTCCATCTTCAATTCATTTATGATGGTTATTTTTCTCACGGGTTTAGTCTCAATGATCCTGATGCGGACTCTGAGAAATGACTATGCAAAGTATGCTCGCGAAGAAGATGATTTGGAAAGCCTGGAGAGAGATGTTAGTGAAGAGTCAGGGTGGAAACTTGTTCATGGAGATGTTTTCCGAACACCACGAAACTTGGTCTTGCTGTCAGCATTAGTGGGCACGGGTGCACAACTTGCTATGCTTGTGCTTCTTGTCATCGTGCTGGCAATGGTTGGCATGCTATATGTTGGTCGTGGAGCAATTGTCACAACATTTATTGTCTGCTATGCCCTTACGTCATTTATCTCTGGTTACGTGAGTGGAGGGCTGTACTCACGCAATGATGGTAAGCATTGGGTCAAGTCAATGATACTTACAGCCTCACTCTTTCCATTCTTATGCTTTGGAATTGGCTTCACTTTGAACATAGTGGCTATATTTTACCGATCCCTGGCTGCTATCCCTTTTGGCACTATGGTGGTGGTATTTATAATATGGGCTTTTATTTCATTCCCTTTAGCACTTTTGGGAACAGTTGTTGGAAGGAACTGGAGTAGGGCTTCAGATAATCCATGCCGTGTGAAGAGTATTCCTCGGCCAATTCCTGAGAAAAAGTGGTATCTTACTCCATCGGTAGTGTCAGTGATGGGGGGTCTGCTTCCATTTGGGAGTATTTTCATCGAGATGTATTT

Fln Alignment:

biogeco2_euler_4579___LELTYSVHWVETNITFARRFDVYLDYPFFEH--QIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAXXXXXXXXXXXXXXXXSGWKLVHGDVFRTPRNLVLLSALVGTGXXXXXXXXXXXXXXXXXXLY-VGRGAIVTTFIVCYALTSFISGYVSGGLYSRNDGKHWVKSMILTASLFPFLCFGIGFTLNIVAIFYRSLAAIPFGTMVVVFIIWAFISFPLALLGTVVGRNWSRASDNPCRVKSIPRPIPEKKWYLTPSVVSVMGGLLPFGSIFIEMY
B8LKM1_______________IEFVYSVKWAETDVPFKRRMDVYSKSSSLPQHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFIKYSHDEETADEQEET-----GWKYIHGDVFRYPPHKSLFSAVLGSGTQLLALAIFIFMLALVGVFYPYNRGALYTALVVIYALTSGIAGYTAASFYRQLEGTNWVRNLLLTGCLFCGPLFLTFCFLNTVAIAYNATAALPFGTILVILLIWTLVTSPLLVLGGIAGKNSRAEFQAPCRTTKYPREIPPLPWYRGTVPQMAMAGFLPFSAIYIELY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain