SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85405

Length: 272 nt

UniGene Fasta

>sp_v2.0_unigene85405
AATTCAGGGAAAAGGACATGGGCTTACTGCAGACTGGTGGGCTTTAGGAGTGCTTATCTATTTTATGTTGCATGGTGATCTTCCATTTGGGTCATGGAGAGAAAGTGATTTGGACATTTTTGCAAAAATTGCACGAAGAGATCTTATCTCGTATTGATTCAACGTCTGAACTTCATTATGCCGATGAACACCAGTTGTCTGGTCTTTGTTCATCAATTGACTTGAAAGACTCAAATACACAAGAATGGCTGGATGAGTGGTAGCAGTTTACT

Ace file of the UniGene sp_v2.0_unigene85405

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative cAMP-dependent protein kinase [Arabidopsis thaliana]	-	-	3.0e-15	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	protein phosphatase 2c and cyclic nucleotide-binding kinase domain-containing protein	-	-	8.41507e-22	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	8.41507e-22	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	8.41507e-22	86%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	cAMP/cGMP-dependent protein kinase	IPR002373	-	-
Sma3		IPR014045	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NPF9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 40 aas, your sequence is shorter than subject: 52 - 385

Fln protein: IQGKGHGLTADWWALGVLIYFMLHGDLPFGSWRESDLDIFAKIARRDLISY*

Protein Length: 53

Fln nts: AATTCAGGGAAAAGGACATGGGCTTACTGCAGACTGGTGGGCTTTAGGAGTGCTTATCTATTTTATGTTGCATGGTGATCTTCCATTTGGGTCATGGAGAGAAAGTGATTTGGACATTTTTGCAAAAATTGCACGAAGAGATCTTATCTCGTATTGATTCAACGTCTGAACTTCATTATGCCGATGAACACCAGTTGTCTGGTCTTTGTTCATCAATTGACTTGAAAGACTCAAATACACAAGAATGGCTGGATGAGTGGTAGCAGTTTACT

Fln Alignment:

biogeco2_euler_2530___GKGHGLTADWWALGVLIYFMLHGDLPF
A9NPF9_______________GKGHGIAVDWWAFGVLLYEMVYGKTPF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain