SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene85268

Length: 553 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene85268
AAATGGGTGGTGGTATGCTGATGCGTTTTAGGGCTTTTGCCTGTCTGTTCTTTCTAAGTTTTCTTCAGCAAGCTGCAGCCAGAAGAAATGGGTTTGTGAAGACAAAGGGCACCCATTTTTCTGTCAATGGGAATCCACTGTTTGTCAATGGGTTCAACTCTTACTGGCTAATGACTATGGCAGCAGATCCAACACAGAGAAATAAGGTTACCTCTGCTTTTGAACAAGCTGCAGCTTCTCGGCTCAATGTTGCCAGAACTTGGGCATTCAACGATGGCCAGTACGAGGCATTGCAGACTTCTCCCGGTGTATATGATGAACATGTCTTTCAGGCCCTGGACTTCGTGATCTCTGAGGCCAAGAAGTATGGTCTCAGACTAATACTTAGCCTGGCCAACAATTATGCGGACTTCGGAGGAAAGGCCCAATATGTACAATGGGCGAGTCTCAACTCTGAAGATGATTTTTTCACCAATCCCACTGTTAAAGGATACTATAAGAACCATATTAAGACTGTATTGACCAGAGTGAACAGCATTACTGGAGTAGCCTA

Ace file of the UniGene sp_v2.0_unigene85268 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	hydrolase, hydrolyzing O-glycosyl compounds, putative	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	hydrolyzing o-glycosyl	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9Z9

Fln msg: Distance to subject end: 231 aas, atg_distance in limit (1-15): atg_distance = 9, your sequence is shorter than subject: 183 - 429

Fln protein: MGGGMLMRFRAFACLFFLSFLQQAAARRNGFVKTKGTHFSVNGNPLFVNGFNSYWLMTMAADPTQRNKVTSAFEQAAASRLNVARTWAFNDGQYEALQTSPGVYDEHVFQALDFVISEAKKYGLRLILSLANNYADFGGKAQYVQWASLNSEDDFFTNPTVKGYYKNHIKTVLTRVNSITGVA

Protein Length: 184

Fln nts: AA_-_ATGGGTGGTGGTATGCTGATGCGTTTTAGGGCTTTTGCCTGTCTGTTCTTTCTAAGTTTTCTTCAGCAAGCTGCAGCCAGAAGAAATGGGTTTGTGAAGACAAAGGGCACCCATTTTTCTGTCAATGGGAATCCACTGTTTGTCAATGGGTTCAACTCTTACTGGCTAATGACTATGGCAGCAGATCCAACACAGAGAAATAAGGTTACCTCTGCTTTTGAACAAGCTGCAGCTTCTCGGCTCAATGTTGCCAGAACTTGGGCATTCAACGATGGCCAGTACGAGGCATTGCAGACTTCTCCCGGTGTATATGATGAACATGTCTTTCAGGCCCTGGACTTCGTGATCTCTGAGGCCAAGAAGTATGGTCTCAGACTAATACTTAGCCTGGCCAACAATTATGCGGACTTCGGAGGAAAGGCCCAATATGTACAATGGGCGAGTCTCAACTCTGAAGATGATTTTTTCACCAATCCCACTGTTAAAGGATACTATAAGAACCATATTAAGACTGTATTGACCAGAGTGAACAGCATTACTGGAGTAGCCTA

Fln Alignment:

biogeco1_euler_28844___RNGFVKTKGTHFSVNGNPLFVNGFNSYWLMTMAADPTQRNKVTSAFEQAAASRLNVARTWAFNDGQYEALQTSPGVYDEHVFQALDFVISEAKKYGLRLILSLANNYADFGGKAQYVQWASL------NSEDDFFTNPTVKGYYKNHIKTVLTRVNSITGV
D5A9Z9_______________RMSFVERNGSHFVVDDKELYVNGWNSYWLMDQSVGDSTRHRVKTMLRRGAEMGLTVVRTWAFNDGGYNALQQFPGTFDERVLRALDFVIVEARRNGLRLIFSLVNNLNAYGGKVQYVEWAHAAGINVGSSNDSFFSDPTIRGYYKEYVKSILVRKNSISGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain