SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83919

Length: 248 nt

Origin of reads: Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene83919
AATGTAGCTAAGATCCAGGACAAGGAAGGGATTCCCCCTGACCAGCAGCGGCTGATCTTTGCTGGAAACAGCTTGAAGATGGCCGAACTCTTGCCGACTACAATATCCAGAAAGAATCCACCTTGCACCTGGTCCTACGTCTGAGGGGTGGTATGCAGATCTTTGTTAAAACTCTAACCGGCAAGACGATCACCTTGGAAGTTGAAAGCTCTGATACTATTGATAATGTTAAGGCGAAGATCCAGGAT

Ace file of the UniGene sp_v2.0_unigene83919

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH	-	-	2.0e-33	100%
FL-Next	tr=Polyubiquitin; Pinus sylvestris (Scots pine).	-	-	0.0	87%
Blast2go	polyubiquitin	-	-	1.78062e-34	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	1.78062e-34	99%
Blast2go	intracellular	GO:0005622	Cellular Component	1.78062e-34	99%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q41067

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 26 aas, your sequence is shorter than subject: 83 - 761

Fln protein: NVAKIQDKEGIPPDQQRLIFAxxxxxxGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD

Protein Length: 84

Fln nts: AATGTAGCTAAGATCCAGGACAAGGAAGGGATTCCCCCTGACCAGCAGCGGCTGATCTTTGCTxxxxxxxxxxxxxxxxxxGGCCGAACTCTTGCCGACTACAATATCCAGAAAGAATCCACCTTGCACCTGGTCCTACGTCTGAGGGGTGGTATGCAGATCTTTGTTAAAACTCTAACCGGCAAGACGATCACCTTGGAAGTTGAAAGCTCTGATACTATTGATAATGTTAAGGCGAAGATCCAGGAT

Fln Alignment:

AllPineV4_rep_c145714___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Q41067_______________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain