SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83917

Length: 455 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene83917
AATGTCCATTGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAACAGCGTCTCATTTTTGCCGGTAAACAGTTGGAAGATGGACGCACTCTTGCCGACTACAATATCCAGAAAGAATCCACCTTGCACCTGGTCCTACGTCTGAGGGGTGGTATGCAGATCTTTGTTAAAACCCTCACCGGCAAAACGATCACCTTGGAAGTTGAGAGCTCTGACACTATTGATAATGTTAAGGCGAAAATTCAGGATAAGGAGGGTATCCCTCCCGACCAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTAGAAGATGGACGCACTCTGGCTGATTATAACATTCAGAAGGAGTCTACTCTGCACCTGGTGCTCCGTCTTCGTGGCGGTGATTTTTAATTGTTAAAGATATGTCGGTCTGTTGAGGTTACATAGCAGTCATGTTTGA

Ace file of the UniGene sp_v2.0_unigene83917

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH	-	-	98%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	99%
Blast2go	ubiquitin-like protein	-	-	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	0.0	99%
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	99%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: your sequence is shorter than subject: 135 - 229

Fln protein: MSIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF*

Protein Length: 136

Fln nts: A_-_ATGTCCATTGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAACAGCGTCTCATTTTTGCCGGTAAACAGTTGGAAGATGGACGCACTCTTGCCGACTACAATATCCAGAAAGAATCCACCTTGCACCTGGTCCTACGTCTGAGGGGTGGTATGCAGATCTTTGTTAAAACCCTCACCGGCAAAACGATCACCTTGGAAGTTGAGAGCTCTGACACTATTGATAATGTTAAGGCGAAAATTCAGGATAAGGAGGGTATCCCTCCCGACCAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTAGAAGATGGACGCACTCTGGCTGATTATAACATTCAGAAGGAGTCTACTCTGCACCTGGTGCTCCGTCTTCGTGGCGGTGATTTTTAA___TTGTTAAAGATATGTCGGTCTGTTGAGGTTACATAGCAGTCATGTTTGA

Fln Alignment:

AllPineV4_rep_c145710___SIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Q7FPA4_______________TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain