SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene83356

Length: 449 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene83356
ATGGGGGTGACTGAGACTTGTGGGCCAATCCAGGATCGGACGGTCGTGGTCGTTTGAATGGATTAAAACTTGTCTCTCCTAGGGTTTTAAGCAATCTTGGTGGGTTTGTATGGGGAGCTTCTGTCATTTCCTACCGGGCCGGAGCTTCTTCCTTCTTCAGAAATCGAAGGAATTTAGCCATGGGAAAGGGTCCTGGACTGTACTCCGACATTGGAAAGAAGACCAGAGATCTTCTCAACAAGGATTACAATTTCGATCAGAAGTTTAGTTTCACTTCCTACACATCCACTGGACTGGCATTTACATCTACTGGCATTAAGAAAGGAGAGTTTTTTCTGGGAGATCTGAACACTCAGCTGAAGAATAATAACATCACAACTGATATTAAAGTGGATACAAGTTCCAATTTATTTGCAACTGTGACAATTGATGAACCGGCACCAGGTGTG

Ace file of the UniGene sp_v2.0_unigene83356

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Voltage-dependent anion-selective channel, putative n=1 Tax=Ricinus communis RepID=B9S2B6_RICCO	-	-	3.0e-33	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	voltage-dependent anion-selective	-	-	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Porin, eukaryotic type	IPR001925	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU89

Fln msg: Distance to subject end: 186 aas, your sequence is shorter than subject: 90 - 276

Fln protein: MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNITTDIKVDTSSNLFATVTIDEPAPGV

Protein Length: 91

Fln nts: ATGGGGGTGACTGAGACTTGTGGGCCAATCCAGGATCGGACGGTCGTGGTCGTTTGAATGGATTAAAACTTGTCTCTCCTAGGGTTTTAAGCAATCTTGGTGGGTTTGTATGGGGAGCTTCTGTCATTTCCTACCGGGCCGGAGCTTCTTCCTTCTTCAGAAATCGAAGGAATTTAGCC_-_ATGGGAAAGGGTCCTGGACTGTACTCCGACATTGGAAAGAAGACCAGAGATCTTCTCAACAAGGATTACAATTTCGATCAGAAGTTTAGTTTCACTTCCTACACATCCACTGGACTGGCATTTACATCTACTGGCATTAAGAAAGGAGAGTTTTTTCTGGGAGATCTGAACACTCAGCTGAAGAATAATAACATCACAACTGATATTAAAGTGGATACAAGTTCCAATTTATTTGCAACTGTGACAATTGATGAACCGGCACCAGGTGTG

Fln Alignment:

AllPineV4_rep_c143938___MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNITTDIKVDTSSNLFATVTIDEPAPGV
A9NU89_______________MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNVTTDIKVDTSSNLFATVTIDEPAPGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain