SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82962

Length: 531 nt

Origin of reads: Inia v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene82962
CGTCGTGACCTTGGCTGTCACTCATTCATCTTGTGCGAGTCTCTCTGCTCTCTACGCCGCTGCGAAGCTGTTCTGTGGTGCTTCTGATTCTCCAGACTCAGGCAGCCGTGTTTGTAAGAGAATTTAGTTCATCATGGGAAAGGAGAAAACCCATATCAACATTGTGGTTATTGGCCATGTCGACTCCGGCAAGTCAACAACCACTGGGCATTTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAACGTTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCTGAACGTGAACGTGGTATCACAATTGATATTGCACTGTGGAAGTTTGAGACAACTAAATACTAGGATTCCTATGAGAGGAACTGAACTGGAAAATGTACCATACACACCGAGAGCGTTTGGCTGGATCGCCACAAGGCCCACAACTTGTGCAACGTGGTGTTGACGTGGCATGGAATTGGGTACGAGATCATCCACTCGGACAT

Ace file of the UniGene sp_v2.0_unigene82962

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	elongation factor 1 alpha [Saccharum hybrid cultivar CP65-357]	-	-	1.99965e-42	100%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	elongation factor 1- expressed	-	-	0.0	99%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	99%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	99%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	99%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSF0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 315 aas, your sequence is shorter than subject: 86 - 448

Fln protein: MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY*

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCATCTTGTGCGAGTCTCTCTGCTCTCTACGCCGCTGCGAAGCTGTTCTGTGGTGCTTCTGATTCTCCAGACTCAGGCAGCCGTGTTTGTAAGAGAATTTAGTTCATC_-_ATGGGAAAGGAGAAAACCCATATCAACATTGTGGTTATTGGCCATGTCGACTCCGGCAAGTCAACAACCACTGGGCATTTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAACGTTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCTGAACGTGAACGTGGTATCACAATTGATATTGCACTGTGGAAGTTTGAGACAACTAAATACTAGGATTCCTATGAGAGGAACTGAACTGGAAAATGTACCATACACACCGAGAGCGTTTGGCTGGATCGCCACAAGGCCCACAACTTGTGCAACGTGGTGTTGACGTGGCATGGAATTGGGTACGAGATCATCCACTCGGACAT

Fln Alignment:

AllPineV4_rep_c142858___MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY
C0PSF0_______________MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain