SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82929

Length: 545 nt

Origin of reads: Inia v1 Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene82929
ATCCCCTTGAGTGCCTTGAATGTCGATGTAACGGAGTTCCAAACAAACTTGGTCCCGTATCCTCGAATCCACTTTATGCTTTCGTCATACGCCCATGGGATCGCCAAGTGCGATCCTCGCCACGGAAAATACATGGCCTGTTGTCTTATGTACCGTGGAGATGTCGTGCCCAAGGATGTCAATGCCGCTGTCGCAACGATTAAGACAAAGAGAACCATCCAGTTTGTTGATTGGTGTCCCACAGGATTTAAATGCGGAATCAACTACCAGCCTCCCACCGTTGTCCCCGGAGGCGATCTCGCCAAGGTTCAGAGAGCCGTGTGCATGATTTCCAACTCGACCAGTGTTGCAGAGGTGTTCTCGAGAATCGATCATAAGTTCGATCTCATGTATGCCAAGCGAGCATTTGTTCATTGGTATGTGGGCGAGGGTATGGAAGAGGGCGAGTTTTCCGAAGCGCGTGAGGATCTTGCTGCCCTGAGAAGGACTATGAGGAGGTTGGCGCTGAGTCTGCAGAGGGAGAGGAAGGTGATGAGGGACACGAG

Ace file of the UniGene sp_v2.0_unigene82929 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin alpha-6 chain n=85 Tax=Eukaryota RepID=TBA6_ARATH	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	alpha tubulin	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQU1

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 181 - 450

Fln protein: IPLSALNVDVTEFQTNLVPYPRIHFMLSSYAHGIAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALRRTMRRLALSLQRERKVMRDT

Protein Length: 182

Fln nts: ATCCCCTTGAGTGCCTTGAATGTCGATGTAACGGAGTTCCAAACAAACTTGGTCCCGTATCCTCGAATCCACTTTATGCTTTCGTCATACGCCCATGGGATCGCCAAGTGCGATCCTCGCCACGGAAAATACATGGCCTGTTGTCTTATGTACCGTGGAGATGTCGTGCCCAAGGATGTCAATGCCGCTGTCGCAACGATTAAGACAAAGAGAACCATCCAGTTTGTTGATTGGTGTCCCACAGGATTTAAATGCGGAATCAACTACCAGCCTCCCACCGTTGTCCCCGGAGGCGATCTCGCCAAGGTTCAGAGAGCCGTGTGCATGATTTCCAACTCGACCAGTGTTGCAGAGGTGTTCTCGAGAATCGATCATAAGTTCGATCTCATGTATGCCAAGCGAGCATTTGTTCATTGGTATGTGGGCGAGGGTATGGAAGAGGGCGAGTTTTCgGAAGCGCGTGAGGATCTTGCTGCCCTGAGAAGGACTATGAGGAGGTTGGCGCTGAGTCTGCAGAGGGAGAGGAAGGTGATGAGGGAtACGAG

Fln Alignment:

AllPineV4_rep_c142754___ALNVDVTEFQTNLVPYPRIHFMLSSYAHGI--------------------------AKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED
C0PQU1_______________ALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain