SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82742

Length: 1160 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene82742

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative DOF zinc finger protein n=1 Tax=Jatropha curcas RepID=D3GA37_9ROSI	-	-	1.0e-34	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	f-box family protein	-	-	2.90464e-40	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	negative regulation of cell proliferation	GO:0008285	Biological Process	2.90464e-40	73%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Zinc finger, Dof-type	IPR003851	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3		IPR012335	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
816	33	66			0.999861
820	33			66	0.997452
834		66	33		0.989933
836	33			33	0.997753
837		66	33		0.989933
838	66		33		0.997458
846		66		33	0.997452
856	33			66	0.997452
858			33	66	1.0
860	33			66	0.997452
868		33		66	0.997452
892	25		75		0.996473
902	25	75			0.996473
921	75		25		0.996473
959			75	25	0.996473
1027		33		66	0.997459
1093		33		66	0.997458
1096		66		33	0.997452
1098			33	66	0.997471
1107		33	66		0.997452
1108		33		66	0.997452
1143			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
793	814	GCA GCA GCA GCA GCA GCA GCA G	22

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain