SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82735

Length: 913 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene82735

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DnaJ protein homolog n=12 Tax=core eudicotyledons RepID=DNJH_CUCSA	-	-	2.0e-30	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	96%

Source	InterPros	Term	Type	Identity
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Acetyl-CoA biotin carboxyl carrier	IPR001249	-	-
Sma3	Heat shock protein DnaJ, cysteine-rich domain	IPR001305	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Biotin-binding site	IPR001882	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3		IPR015609	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
392			18	81	0.999994
394	20			80	0.999996
396		80		20	0.999996
402	63	9			1.0
403		9	63	27	1.0
409		66		33	1.0
415	12	62			1.0
468	10	90			0.90298
469		80		20	0.995493
470	80		20		0.995493
471		80	20		0.995493
472		80	20		0.995493
594		85		14	0.993533
652		11	88		0.991528
653			11	88	0.991528
655		11	88		0.991528
657	88			11	0.991528
660		11		88	0.991528
661	88	11			0.923564
662	88			11	0.923564
666		90	10		0.90298
667		90	10		0.90298
668	80			20	0.999996
670	90			10	0.90298
672	80	20			0.999996
673	90			10	0.90298
675			90	10	0.90298
676		10	90		0.90298
677	10	90			0.90298
679			90	10	0.90298
682		10	90		0.90298
684		10		90	0.90298
854			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain