SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82369

Length: 530 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene82369
CGTCGTGACCTTGGCTGTCACTCATTCTCGGCAGCTGGTGATGAATTTCAAATAAAGTTCTGGGACATGGATAACACCAACATCCTGACAATAATTGATGTTGACGGTAGTTTGGCTAGTCCTCGCCTTCGTTTCAGCGAAGATGGTTCCCTATTGGCAGTCACAATGAATGACAATGGCATAAAGATCTTACCCAACGCAGAGGGATTTTGCTTAATTGGCATGCTGGAGAGTAGATCTTTTGAAGGAACGAAGGTGCCACCAGAGACAATGGCAACAAAGTGTTGTAGACGTTCGGACAGGCTTCCGGTTCCCTTCGCAGTGCTGTAGAAGGTTCGGCCAGACTTCCACCTGCATTGTCAAAGACCAATTTTAGTAGTATAGAGTCTAGAGAGACAGTCCGACCCCAGATGTTAAACGAAGGCTTCTAGATGAGGTCACAGACGAGCAAGAACTGGAAATTGACTGAGATCACTGATTCGGGTCCCCAGATGTTAAACGAAGGCTTCTAGATGAGGTCACAGACTAGA

Ace file of the UniGene sp_v2.0_unigene82369

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-40 repeat protein-like n=7 Tax=Poaceae RepID=Q7EYE2_ORYSJ	-	-	2.0e-26	66%
FL-Next	sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Blast2go	ramosa 1 enhancer locus 2	-	-	1.38002e-28	77%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LRZ0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 360 aas, your sequence is shorter than subject: 110 - 1131

Fln protein: RRDLGCHSFSAAGDEFQIKFWDMDNTNILTIIDVDGSLASPRLRFSEDGSLLAVTMNDNGIKILPNAEGFCLIGMLESRSFEGTKVPPETMATKCCRRSDRLPVPFAVL*

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTCGGCAGCTGGTGATGAATTTCAAATAAAGTTCTGGGACATGGATAACACCAACATCCTGACAATAATTGATGTTGACGGTAGTTTGGCTAGTCCTCGCCTTCGTTTCAGCGAAGATGGTTCCCTATTGGCAGTCACAATGAATGACAATGGCATAAAGATCTTACCCAACGCAGAGGGATTTTGCTTAATTGGCATGCTGGAGAGTAGATCTTTTGAAGGAACGAAGGTGCCACCAGAGACAATGGCAACAAAGTGTTGTAGACGTTCGGACAGGCTTCCGGTTCCCTTCGCAGTGCTGTAGAAGGTTCGGCCAGACTTCCACCTGCATTGTCAAAGACCAATTTTAGTAGTATAGAGTCTAGAGAGACAGTCCGACCCCAGATGTTAAACGAAGGCTTCTAGATGAGGTCACAGACGAGCAAGAACTGGAAATTGACTGAGATCACTGATTCGGGTCCCCAGATGTTAAACGAAGGCTTCTAGATGAGGTCACAGACTAGA

Fln Alignment:

AllPineV4_rep_c140667___FSAAGDEFQIKFWDMDNTNILTIIDVDGSLAS-PRLRFSEDGSLLAVTMNDNGIKILPNAEGFCLIGMLESRSFEGTK
Q9LRZ0_______________FLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
143			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain