SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82363

Length: 408 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene82363
CGTCGTGACCTTGGCTGTCACTCATCTTTTTCAAGTTCGGCTGCCATGCCGAATTCTGGATATGTCTGCTGTTGACTTTGCTTGGGTACTTACCGGGAATAATATATGCCGTCTATGCTATCACCCAGTGATACTAAGCGGTGGCTGAACACGCTTCATTTGCTTTGGGATTTCATGCCATCTATTTCTTCTCCTCACGTACACAGATTTGGATTTCTTTATTCAGTTGCTTCCTCATGAACAAAACTTATGCTGCAGCAGTTGCAGCTGCATGGCGTTTCTACTTTATTCAGTTGTTTGTATGAACCGGTGGATTTGTTATTGTTAAGCGGCCCTCAGAACCGCTGATGCTCTTCGTCTGCCTCCTCTTTTTCGCTTTTCATTGGCAATAAATGAATCATAATTTAG

Ace file of the UniGene sp_v2.0_unigene82363

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Low temprature induced-like protein n=1 Tax=Picea sitchensis RepID=A9NQK4_PICSI	-	-	5.0e-06	60%
FL-Next	tr=Low temprature induced-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	low temprature induced-like protein	-	-	2.75653e-09	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteolipid membrane potential modulator	IPR000612	-	0.0	-
Sma3	Extracellular solute-binding protein, family 3, conserved site	IPR018313	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQK4

Fln msg: atg_distance in limit (1-15): atg_distance = 15, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 41 - 59

Fln protein: PWLSLIFFKFGCHAEFWICLLLTLLGYLPGIIYAVYAITQ*

Protein Length: 42

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTTTTCAAGTTCGGCTGCCATGCCGAATTCTGGATATGTCTGCTGTTGACTTTGCTTGGGTACTTACCGGGAATAATATATGCCGTCTATGCTATCACCCAGTGA___TACTAAGCGGTGGCTGAACACGCTTCATTTGCTTTGGGATTTCATGCCATCTATTTCTTCTCCTCACGTACACAGATTTGGATTTCTTTATTCAGTTGCTTCCTCATGAACAAAACTTATGCTGCAGCAGTTGCAGCTGCATGGCGTTTCTACTTTATTCAGTTGTTTGTATGAACCGGTGGATTTGTTATTGTTAAGCGGCCCTCAGAACCGCTGATGCTCTTCGTCTGCCTCCTCTTTTTCGCTTTTCATTGGCAATAAATGAATCATAATTTAG

Fln Alignment:

AllPineV4_rep_c140652___IFFKFGCHAEFWICXXXXXXXXXPGIIYAVYAITQ
A9NQK4_______________VFLKFGCHAEFWICLLLTILGYLPGIVYAIYAITK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain