SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82343

Length: 1351 nt

Origin of reads: Inia v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene82343

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L30 n=1 Tax=Wolffia arrhiza RepID=D1MI90_WOLAR	-	-	82%
FL-Next	sp=60S ribosomal protein L30; Lupinus luteus (European yellow lupin).	-	-	86%
Blast2go	60s ribosomal protein l30	-	-	93%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L30e	IPR000231	-	-
Sma3	Ribosomal protein L7Ae/L30e/S12e/Gadd45	IPR004038	-	-
Sma3	Glyoxalase/fosfomycin resistance/dioxygenase	IPR004360	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O49884

Fln msg:

Fln protein: MVATKKTKKAHENINSRLALVMKSGKYTLGYKTTIKSIRTNKGKFIIIANNCPPLRRSEIEYYAMLAKVGVHHFNGNNVDLGTACGKYYRVCCLSIMDPGDSDIIKTVSGDQ*

Protein Length: 114

Fln nts: CGAGTTCAGACGGAGAAGGGTCAAGAAAAAAGGTTAGACGCAAATACGCAGAAGTTAAGCCTACGCTTAAGCTTGCGCGTCGTCCTCGGCTACGGCAGACTCTTTAATGGTGGTAGCGAAACTCCATATAAAACCATAGGGATCCTTCACTTTCCGTATCGTTGACCCCAAGGACGTTCCGCAACCTCTTCAGTAACGTTGTCCGTCTCCAAATGGAGAATCACTGAGGTGCCCTTAAGGGCCACCGGCGATTTCACCTCTGCACCGGCCTCTTCGGTCTCATCACAGACCATAACCTCGGCAGCACCGAACTTCAAATGGGCATGAAGGATGAGAGGGAGCTCTTGGTCAGCCTTACGCTTGGGATGATGAGACTTCGCAATTTCTTCAGCCCCAAACACGCGCTTATAGAAACTTATGGCGTCCGCAGCATGCGGAGCCTCCACAATCAAATGGGGTTTCAGAATAGAGAACGTCGGCAGCTTAGCCACAGCACCATTTCCCTTCCCGTTCTCTGCCACAGCCGCCGCATTCTCTTGAGCCATTTTCTCGCTCGCACTCACAAATACAGAACACTCCTCTTACTGAAAGAAAGCGTAAACGTAGCCGGTCAGGTTTCCTCTTGTATCTCAGAAACCCTTAGTGCGGCCGGGGCGAGGCGAGGCGAGGCGAGGCGAGCGTATTATTGCAGGCAACAGGCACA_-_ATGGTGGCCACAAAGAAAACTAAAAAGGCTCATGAGAATATCAACAGCAGATTGGCGCTTGTCATGAAGAGTGGCAAGTATACACTGGGTTACAAGACTACCATCAAGTCTATAAGGACTAACAAAGGAAAATTTATTATCATTGCAAATAACTGCCCTCCTCTTCGTAGATCAGAAATAGAGTATTATGCTATGCTTGCTAAGGTTGGAGTGCATCATTTCAATGGAAACAATGTTGATCTGGGAACAGCCTGTGGCAAGTATTACCGTGTGTGCTGTCTTAGCATTATGGATCCAGGTGATTCTGATATTATTAAGACGGTCTCAGGAGATCAGTGA___GAGCATCTGGGATGGTTTAGCAAGAGAATTGTCATTTTCTGACATTGTTCCAATTTTTTGAGAAGGTAGTAGCAAACTAGCGGGTAGAAATTCTCAGAGGCAACGGAGAGTTTAATTTATACTGAGAGGCAGAGAACTCAGTTGAAACTAGAGTTTAGAGTTTAGTTTAGATTGATGTTCTATGTTTGGGAGTGTATTAATTGCTGCACAATGTTGGGGAAAGGTTCCTTTCTATGCAATTGTCTCCTGTGAAAGATATTCATTTTGATTTAATGCAAAATAATTGAATTAGCTGTTAGAATACCAAAA

Fln Alignment:

AllPineV4_rep_c140568___MVATKKTKKAHENINSRLALVMKSGKYTLGYKTTIKSIRTNKGKFIIIANNCPPLRRSEIEYYAMLAKVGVHHFNGNNVDLGTACGKYYRVCCLSIMDPGDSDIIKTVSGDQ
O49884_______________MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGDQ

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
719	83			16	0.994512
724	66		33		0.997452
934	85	14			0.993533
935	85		14		0.993533
937		14	85		0.993533
939	85			14	0.993533
940	85		14		0.993533
943	85	14			0.993533
944	85			14	0.993533
947			14	85	0.993533
949		22	77		0.999999
950	66	11	22		0.999999
951	11			88	0.923564
954		11	88		0.923564
955			77	22	0.999999
958	77	22			0.999999
961	77			22	0.999999
963		77	22		0.999999
968		22	77		0.999999
969	22		77		0.999999
971	77			22	0.999999
972	80	20			0.999996
973	20		80		0.999996
1352			40	60	1.0
1353	60	40			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
653	678	GGCGA GGCGA GGCGA GGCGA GGCGA G	26

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain