SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82321

Length: 367 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene82321
CGTCGTGACCTTGGCTGTCACTCATGGGAGTGTACTGAGCGGAGGAGGGAGCGTGCCTGCACCTCAAGCATCTCCGGCTACATGGACTAACTTGGTCGATGGGCTCCAGAAGGGTGCCCTGTCTACTCGTCTTCAGATCCCGATGATGTATGGGATTGATGCTGTGCATGGCCACAACAATGTGTATGGGGCCACCATCTTCCCTCACAATATTGGGCTTGGAGCTACCAGAGATCCTGATTTGGCTAGAAGAATTGGAGCTGCTACAGCTTTGGAAGTTAGAGCTACTGGCATTCCATACGTGTTTGCTCCGTGTGTTGCTGTTTGCAGAGATCCTCGATGGGGCCGCTGCTATGAGAGCTATAGC

Ace file of the UniGene sp_v2.0_unigene82321

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyl hydrolase-like protein (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z5X8_PICSI	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	glycosyl hydrolase-like protein	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	hydrolase activity, acting on glycosyl bonds	GO:0016798	Molecular Function	92%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	92%
Blast2go	membrane	GO:0016020	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUD1

Fln msg: Distance to subject end: 442 aas, your sequence is shorter than subject: 122 - 631

Fln protein: VVTLAVTHGSVLSGGGSVPAPQASPATWTNLVDGLQKGALSTRLQIPMMYGIDAVHGHNNVYGATIFPHNIGLGATRDPDLARRIGAATALEVRATGIPYVFAPCVAVCRDPRWGRCYESYS

Protein Length: 123

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGGAGTGTACTGAGCGGAGGAGGGAGCGTGCCTGCACCTCAAGCATCTCCGGCTACATGGACTAACTTGGTCGATGGGCTCCAGAAGGGTGCCCTGTCTACTCGTCTTCAGATCCCGATGATGTATGGGATTGATGCTGTGCATGGCCACAACAATGTGTATGGGGCCACCATCTTCCCTCACAATATTGGGCTTGGAGCTACCAGAGATCCTGATTTGGCTAGAAGAATTGGAGCTGCTACAGCTTTGGAAGTTAGAGCTACTGGCATTCCATACGTGTTTGCTCCGTGTGTTGCTGTTTGCAGAGATCCTCGATGGGGCCGCTGCTATGAGAGCTATAGC

Fln Alignment:

AllPineV4_rep_c140503___GSVLSGGGSVPAPQASPATWTNLVDGLQKGALSTRLQIPMMYGIDAVHGHNNVYGATIFPHNIGLGATRDPDLARRIGAATALEVRATGIPYVFAPCVAVCRDPRWGRCYESYS
A9NUD1_______________GSVLSGGGSVPAPKASPATWINMVDDLQKGAMSTRLQIPMMYGIDAVHGHNNAYGATMFPHNIGLGATRDPDLARRIGAATALEVRATGIQYTFAPCVAVCRDPRWGRCYESYS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain