SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82207

Length: 488 nt

Origin of reads: Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene82207
AGACGCCGAAGTCCCTGCAGTCCATTTTTATCCGAGACGAGGACGAGCGCCCCAAGGTGGCTTACAATCAATTCAGCAAAGACATTCCCGTCATTTCCCTCTCTGGTATCGCCGGGGAAGAGAGGGACCGCGTGAGAGACGAAGTGAGCAAGGCCTACAGGCTACCAAGGACGATGGCAAAAACTGGATTACTGTGGAGCCCATTCAAGGAGCCTTTGTTGTCAATTTGGGAGATCATATGCATTATCTGAGCAATGGCAAGTTCAAGACCGCGGACCATCAAGCGGTGGTGAATTCGAACAGCAGCAGGCTGTCTATCGCGACGTTTCAGAATCCAGCGCAGGAGGCCATCGTGTACCCGTTGGATGGAGTTGTAAAGGAGGCGGAAGGCGAGAAGTGTTTCATGGAAGAGCCCATCACTTTTGCACAGATGTACACCAGAAAGATGAGCCGAGACATCGAGCTCGCCCGCCAGAAGAAGATACATT

Ace file of the UniGene sp_v2.0_unigene82207 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Flavanone 3-hydroxylase 2 (Fragment) n=3 Tax=Pseudotsuga menziesii var. menziesii RepID=Q5ME24_PSEMZ	-	-	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	flavanone 3-hydroxylase 2	-	-	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Isopenicillin N synthase	IPR002283	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9Q0

Fln msg: Warning!, your query overlaps and the subject is separated, STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 162 - 359

Fln protein: TPKSLQSIFIRDEDERPKVAYNQFSKDIPVISLSGIAGEERDRVRDEVSKxxQATKDDGKNWITVEPIQGAFVVNLGDHMHYLSNGKFKTADHQAVVNSNSSRLSIATFQNPAQEAIVYPLDGVVKEAEGEKCFMEEPITFAQMYTRKMSRDIELARQKKIH

Protein Length: 163

Fln nts: AGACGCCGAAGTCCCTGCAGTCCATTTTTATCCGAGACGAGGACGAGCGCCCCAAGGTGGCTTACAATCAATTCAGCAAAGACATTCCCGTCATTTCCCTCTCTGGTATCGCCGGGGAAGAGAGGGACCGCGTGAGAGACGAAGTGAGCAAGxxxxxxCAGGCTACCAAGGACGATGGCAAAAACTGGATTACTGTGGAGCCCATTCAAGGAGCCTTTGTTGTCAATTTGGGAGATCATATGCATTATCTGAGCAATGGCAAGTTCAAGACCGCGGACCATCAAGCGGTGGTGAATTCGAACAGCAGCAGGCTGTCTATCGCGACGTTTCAGAATCCAGCGCAGGAGGCCATCGTGTACCCGTTGGATGGAGTTGTAAAGGAGGCGGAAGGCGAGAAGTGTTTCATGGAAGAGCCCATCACTTTTGCACAGATGTACACCAGAAAGATGAGCCGAGACATCGAGCTCGCCCGCCAGAAGAAGATACATT

Fln Alignment:

AllPineV4_rep_c140030___PKSLQSIFIRDEDERPKVAYNQFSKDIPVISLSGIAGEERDRVRDEVSKAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQATKDDGKNWITVEPIQGAFVVNLGDHMHYLSNGKFKTADHQAVVNSNSSRLSIATFQNPAQEAIVYPLDGVVKEAEGEKCFMEEPITFAQMYTRKMSRDIELARQKKI
D5A9Q0_______________PKSLQSIFIRDEDERPKVAYNQFSKDIPVISLSGIEGAERGRVIEEVSKAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQATKDDGKNWITVEPIQGAFVVNLGDHMHYLSNGKFKTADHQAVVNSNSSRLSIATFQNPAQEGIVYPLDGVVKEAEGEKCFMEEPITFTQMYTRKMSRDIELARQKKM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain