SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82195

Length: 746 nt

Origin of reads: Biogeco1 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene82195 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HSP90 domain containing protein	-	-	2.0e-08	53%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	0.0	64%
Blast2go	er-targeted protein	-	-	1.82416e-18	76%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Molecular chaperone, heat shock protein, endoplasmin	IPR015566	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
524		81	18		0.999994
525	72	9		18	0.999994
526			18	81	0.999994
530	72		27		1.0
531		18		81	0.999994
532		81	18		0.999994
534	18	72	9		0.999994
535	9		18	72	0.999994
537	9	9		18	0.999998
540	81	18			0.999994
542	63		9		1.0
545	81		18		0.999994
546	88	11			0.991528
551	87			12	0.992554
552		12	87		0.992554
554		12		87	0.992554
555			12	87	0.992554
556	12			87	0.992554
557		12		87	0.992554
616	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain