SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene82174

Length: 292 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene82174
TGAGAAAAGAGGAGTCCCATTTCCTCAAACCCGCCCCATGGGCGTATACTCTTCAATATGGAACGCAGATGACTGGGCTACTCAAGGTGGCCGCGTAAAGACCGATTGGAGCCACGCTCCTTTTATTTCCACATACACAAGTTTCAACATCGATGCTTGCAAATACAGTACTGGCAGCTCATGTACTTCGTGGTGGGATCAGCCTGCCTACGCTTCACTTAATGCCAAGCAGAGAATGCAACTGAAGTGGGTACAACAAAAATACATGATTTACGACTACTGCAAAGACTCA

Ace file of the UniGene sp_v2.0_unigene82174 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative xyloglucan endotransglucosylase/hydrolase n=1 Tax=Selaginella kraussiana RepID=Q1XD17_9TRAC	-	-	6.0e-33	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 9	-	-	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD91

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 97 - 285

Fln protein: EKRGVPFPQTRPMGVYSSIWNADDWATQGGRVKTDWSHAPFISTYTSFNIDACKYSTGSSCTSWWDQPAYASLNAKQRMQLKWVQQKYMIYDYCKDS

Protein Length: 98

Fln nts: TGAGAAAAGAGGAGTCCCATTTCCTCAAACCCGCCCCATGGGCGTATACTCTTCAATATGGAACGCAGATGACTGGGCTACTCAAGGTGGCCGCGTAAAGACCGATTGGAGCCACGCTCCTTTTATTTCCACATACACAAGTTTCAACATCGATGCTTGCAAATACAGTACTGGCAGCTCATGTACTTCGTGGTGGGATCAGCCTGCCTACGCTTCACTTAATGCCAAGCAGAGAATGCAACTGAAGTGGGTACAACAAAAATACATGATTTACGACTACTGCAAAGACTCA

Fln Alignment:

AllPineV4_rep_c139915___EKRGVPFPQTRPMGVYSSIWNADDWATQGGRVKTDWSHAPFISTYTSFNIDACKYSTGSSCTSWWDQPAYASLNAKQRMQLKWVQQKYMIYDYCKDS
D5AD91_______________EKRGVPYPQTRPMGIFSSIWNADDWATQGGRVKTDWSHAPFLSTYKNFNIDACKYTTGSSCSSWWDQPAYASLNEKQSMQLKWVHEKYMIYDYCKDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain