SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81884

Length: 343 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene81884
CGTCGTGACCTTGGCTGTCACTCAGTCACCACAACAAGGTGATGTTATTGGGTCACAGTGACGACCACCATCATGACAAAGTTATGCAGGCAACGGTTGCACTCAACCATTTTGGCGAAGGTCTCGTGCAGCGAATGCCAAGGTGCCGATTTGGATACTTCCATGTGTTTAACAATGATTACACTGAGTGGGGAATGTATGCCATCGGTGGAAGTTCAAACCCCACCATACTGAGTCAGGGCAATAGATTCATGGCATCTGGAAATCCCTGGCTAAAGAGGTAACCAAGAGGCAAAACTCCACAGAAAGTGAATGGAAAAAGTGGAACTGGATATCGGAAGAT

Ace file of the UniGene sp_v2.0_unigene81884

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable pectate lyase 10 n=2 Tax=Arabidopsis RepID=PLY10_ARATH	-	-	6.0e-39	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	pectate lyase	-	-	4.97181e-42	83%

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF11	IPR001434	-	-
Sma3	Pectate lyase/Amb allergen	IPR002022	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectate lyase, N-terminal	IPR007524	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	AmbAllergen	IPR018082	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWK6

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 52 aas, your sequence is shorter than subject: 94 - 436

Fln protein: S*PWLSLSHHNKVMLLGHSDDHHHDKVMQATVALNHFGEGLVQRMPRCRFGYFHVFNNDYTEWGMYAIGGSSNPTILSQGNRFMASGNPWLKR*

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCACCACAACAAGGTGATGTTATTGGGTCACAGTGACGACCACCATCATGACAAAGTTATGCAGGCAACGGTTGCACTCAACCATTTTGGCGAAGGTCTCGTGCAGCGAATGCCAAGGTGCCGATTTGGATACTTCCATGTGTTTAACAATGATTACACTGAGTGGGGAATGTATGCCATCGGTGGAAGTTCAAACCCCACCATACTGAGTCAGGGCAATAGATTCATGGCATCTGGAAATCCCTGGCTAAAGAGGTAACCAAGAGGCAAAACTCCACAGAAAGTGAATGGAAAAAGTGGAACTGGATATCGGAAGAT

Fln Alignment:

AllPineV4_rep_c138716___LSHHNKVMLLGHSDDHHHDKVMQATVALNHFGEGLVQRMPRCRFGYFHVFNNDYTEWGMYAIGGSSNPTILSQGNRFMASGNPWLK
A9NWK6_______________MSHHNKVMLLGHSDDYTQDVNMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPTNPFSK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain