SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81778

Length: 570 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene81778
CGTCGTGACCTTGGCTGTCACTCATTTCAAAGCAAGCTGAGGAAGTTCTATCAGACCCAGAGACACTAGAAAATGCTGTAAAGCTTGCAAAAAGTATCTGCAAGGAATTGCCATCTGATTTAAGTGCAAAGTGTGATGAAACATTAGGAACATATATACAAGAGGTTGTTTCAGCTCTGCAAGATTACATGAGTCAAGATAAGCTTTGCATTGGTACAGGATTATGTAATGGAAACAACAACAATGATTTGCAATACAAGTTAGGCATGGGCAGAAATACCCCTTATTCATTTGATGCAGGTGATGACACAACTTGTACAATGTGTGAGCAATTTATAGAAGATGCAACAAACTATGTCAGTCAGAACACGACTCAGTCAGAGGTTTTGGCTGTGTTGCACCAGACATGTTCAAAACTCGGTGTTTTCGGTACCGAGGTAGGATTGTTATTGTATTTATAGATCTGATTATTGGACAAGGAGATATATGTTTGGAAAATTTATTTATTTATTCCGTTAATGAGTTCAACTTTAATAAAGAAGTGAAGCCCTGAAAACTTAGAAGTTTGAG

Ace file of the UniGene sp_v2.0_unigene81778

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to surfactant B protein, putative n=1 Tax=Ciona intestinalis RepID=UPI000180CC47	-	-	1.0e-09	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	proactivator polypeptide-like isoform 3	-	-	0.0	51%

Source	GOs	Term	Type	Identity
Blast2go	response to stimulus	GO:0050896	Biological Process	51%
Blast2go	regulation of cellular process	GO:0050794	Biological Process	51%
Blast2go	metabolic process	GO:0008152	Biological Process	51%
Blast2go	multicellular organismal process	GO:0032501	Biological Process	51%
Blast2go	binding	GO:0005488	Molecular Function	51%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	51%
Blast2go	extracellular region	GO:0005576	Cellular Component	51%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	51%

Source	InterPros	Term	Type	Identity
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin B	IPR008139	-	-
Sma3	Saposin-like	IPR011001	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P228

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 40 aas, putative chimeric sequence, your sequence is shorter than subject: 153 - 326

Fln protein: S*PWLSLISKQAEEVLSDPETLENAVKLAKSICKELPSDLSAKCDETLGTYIQEVVSALQDYMSQDKLCIGTGLCNGNNNNDLQYKLGMGRNTPYSFDAGDDTTCTMCEQFIEDATNYVSQNTTQSEVLAVLHQTCSKLGVFGTEVGLLLYL*

Protein Length: 154

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCAAAGCAAGCTGAGGAAGTTCTATCAGACCCAGAGACACTAGAAAATGCTGTAAAGCTTGCAAAAAGTATCTGCAAGGAATTGCCATCTGATTTAAGTGCAAAGTGTGATGAAACATTAGGAACATATATACAAGAGGTTGTTTCAGCTCTGCAAGATTACATGAGTCAAGATAAGCTTTGCATTGGTACAGGATTATGTAATGGAAACAACAACAATGATTTGCAATACAAGTTAGGCATGGGCAGAAATACCCCTTATTCATTTGATGCAGGTGATGACACAACTTGTACAATGTGTGAGCAATTTATAGAAGATGCAACAAACTATGTCAGTCAGAACACGACTCAGTCAGAGGTTTTGGCTGTGTTGCACCAGACATGTTCAAAACTCGGTGTTTTCGGTACCGAGGTAGGATTGTTATTGTATTTATAG___ATCTGATTATTGGACAAGGAGATATATGTTTGGAAAATTTATTTATTTATTCCGTTAATGAGTTCAACTTTAATAAAGAAGTGAAGCCCTGAAAACTTAGAAGTTTGAG

Fln Alignment:

AllPineV4_rep_c138289___ISKQAEEVLSDPETLENAVKLAKSICKELPSDLSAKCDETLGTYIQEVVSALQDYMSQDKLCIGTGLCNGNNNNDLQYKLGMGRNTPYSFDAGDDTTCTMCEQFIEDATNYVSQNTTQSEVLAVLHQTCSKLGVFGTE
A9P228_______________VSNQAEEVLSDPETLENAVKLAKSICNELPSDLSAKCDEMLGTYIQEVVSTLQDYLSQDKLCIGTGLCNGNNNNDLQYKLGMGRNTP-SLDAGDDTTCVMCEQFIEEATYYASQNATQSEVLAALHQTCSKLGVFGTK

SSRs (tot: 1)

Start position	End position	Sequence	Length
498	512	ATTT ATTT ATTT ATT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain