SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81461

Length: 425 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene81461
CGTCGTGACCTTCTGACACGCACGGATGATTCGCCAAATTAAATTGCCACCTAGTGACTGTGTTCAACACTCTGAATCAGGTACGCATTGGATAACACCAGTCATAGCATCCCTGGTTTCTTTCTTGCTTGGGATCCTCGTCACGGTCTTTTTGCAACCCTACATTGCAGCTCGTGAGGGCCGTGGTCCTCGAGATCAAATGCGGGCATGGAAACATTCCCTAATTATCATGGTGAAACAAGTGGAAGGATGAATGGAAAGCCTATCCCAAGACGAAATTTTTATCAATCGCCATCTCTATTGGATGCCGATATGGCGCCTCAGAATATCCCAAGGGAGAAACAATTGTTTAGTAATCCTGTGCAAGATCTGACTAGTTTTGACACATCACTGGAAGCATCTACTTCTGAAACTCTTAGTCCCTT

Ace file of the UniGene sp_v2.0_unigene81461 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	unknown [Picea sitchensis]	-	-	1.21167e-21	86%

Source	InterPros	Term	Type	Identity
Sma3	NHL repeat	IPR001258	-	-
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	-
Sma3	NHL repeat, subgroup	IPR013017	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQD4

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 181 and 178, Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 49 aas, your sequence is shorter than subject: 141 - 264

Fln protein: VVTF*HARMIRQIKLPPSDCVQHSESGTHWITPVIASLVSFLLGILVTVFLQPYIAARxxxWSSRSNAGMETFPNYHGETSGRMNGKPIPRRNFYQSPSLLDADMAPQNIPREKQLFSNPVQDLTSFDTSLEASTSETLSP

Protein Length: 142

Fln nts: CGTCGTGACCTTCTGACACGCACGGATGATTCGCCAAATTAAATTGCCACCTAGTGACTGTGTTCAACACTCTGAATCAGGTACGCATTGGATAACACCAGTCATAGCATCCCTGGTTTCTTTCTTGCTTGGGATCCTCGTCACGGTCTTTTTGCAACCCTACATTGCAGCTCGTxxxxxxxxxTGGTCCTCGAGATCAAATGCGGGCATGGAAACATTCCCTAATTATCATGGTGAAACAAGTGGAAGGATGAATGGAAAGCCTATCCCAAGACGAAATTTTTATCAATCGCCATCTCTATTGGATGCCGATATGGCGCCTCAGAATATCCCAAGGGAGAAACAATTGTTTAGTAATCCTGTGCAAGATCTGACTAGTTTTGACACATCACTGGAAGCATCTACTTCTGAAACTCTTAGTCCCTT

Fln Alignment:

AllPineV4_rep_c136871___RMIRQIKLPPSDCVQHSESGTHWITPVIASLVSFLLGILVTVFLQPYIAAREGGPWSSRSNAGMETFPNYHGETS
B8LQD4_______________RMIRQIKLPPGDCVQHSGSGTHWVTPVIASGVSFLLGLLLMAFLQPYIAAYTGGLWSSSSNASMERIPNNHGETS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain