SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81390

Length: 1252 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene81390

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein [Arabidopsis thaliana] gb\|AEE29691.1\| Thaumatin-like protein [Arabidopsis thaliana]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	thaumatin-like protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	0.0	-
Sma3	Thaumatin, conserved site	IPR017949	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYU8

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: CEGGSGVLATTFTLFNKCKHSVWPGIQPSAGRPVLANGGFRLMPSQTVSIVPPSEWSGRIWGRHGCSFDSNGKGVCATGDCGGQLQCNGAGGAPPATLAEFTLGTQDFYDVSLVDGYNLPIAIATRKGSGKCTYAGCISDLNLNCPPSLQVKNEQGCVMACKSACFAFSTPQYCCTGSYGNPQTCRPTSFSRLFKNACPRAYSYAYDDPSSLVTCSGADYLITFCPLG*

Protein Length: 230

Fln nts: ATGGGGACACCTCATCCTCTTATTTCTTCACAGTCGGCACGAAATGGGGTTAAAGATTGACTATCTAGTTGCCTGCTTCATGGTGCTCTATATTTCTGGTAATATAATAAATCTCTCTTGTTTTAGTTGGCATTCTGGTTTTCAAGCTTTTCAGATTTTATTTCATGTTGTATGACTTGGTATGGTTATGGTTGGCTGTG_-_ATGTGAAGGTGGAAGTGGTGTTTTAGCAACAACTTTTACTCTGTTTAACAAATGCAAGCATTCGGTGTGGCCCGGAATCCAGCCCAGCGCCGGCAGACCCGTGCTTGCCAATGGTGGGTTTCGTTTAATGCCGTCACAGACCGTGTCCATCGTTCCCCCTTCGGAATGGTCGGGACGAATATGGGGCCGTCACGGGTGCTCCTTCGATAGCAATGGAAAAGGCGTTTGTGCCACCGGTGACTGCGGAGGCCAACTCCAATGCAACGGTGCCGGAGGCGCGCCACCAGCCACGCTCGCCGAGTTCACCCTGGGCACACAGGACTTCTACGATGTGAGTCTCGTGGATGGCTACAATCTTCCCATTGCCATAGCTACCCGCAAAGGCTCCGGTAAATGCACATATGCGGGGTGCATCAGTGACTTGAACCTCAACTGCCCGCCTTCACTTCAGGTGAAGAATGAGCAGGGCTGTGTCATGGCTTGTAAGAGTGCCTGCTTTGCCTTCAGCACGCCTCAGTATTGTTGTACGGGTTCCTATGGAAATCCCCAGACATGCAGACCCACTAGTTTCTCTCGTCTATTTAAGAATGCGTGTCCCAGAGCTTACAGTTATGCCTATGACGATCCGAGCAGCTTGGTTACATGCTCTGGGGCTGACTATCTTATCACCTTCTGCCCTCTTGGATAGCGACGCTGCAAACGCTTTCCACTTCTGAACATTTAAGAGCAGCTATTTGGCTGTTTAAGACCTTAGTTGCTTGAAGAAAATGTAATTGTAATTTGTGATCACTCTTCATTTATAGGTAGTTGTATTTTGTGATCATTTTTCACTTTGGGCACTTAAGAGCAGCTATTTGGGCCATAAAATCATAGCTGCCATGAAAGTGTAGTTGCAATATGTAGATTTATGGCTTTTGTGCAGACAATAGGCATGGCTTAGGTTGATATTATTAGCTACTTTATATGTATTTCAGTTGTAATGAAGCCAAATTTATAGTAAGCCAAGGTGCAAGCTATACTTAAATCAAATCTTTCTTATTTTGTTGAAAAAC

Fln Alignment:

AllPineV4_rep_c136555___GGSGVLATTFTLFNKCKHSVWPGIQPSAGRPVLANGGFRLMPSQTVSIVPPSEWSGRIWGRHGCSFDSNGKGVCATGDCGGQLQCNGAGGAPPATLAEFTLGTQDFYDVSLVDGYNLPIAIATRKGSGKCTYAGCISDLNLNCPPSLQVKNEQGCVMACKSACFAFSTPQYCCTGSYGNPQTCRPTSFSRLFKNACPRAYSYAYDDPSSLVTCSGADYLITFCP
A9NYU8_______________GGSGVFATTFTLFNKCKHSVWPGIQPSAGRPVLANGGFRLMPLQAMSIVPPAGWSGRIWGRHGCSFDSDGKGLCATGDCGGQLHCNGAGGAPPATLAEITLGTQDFYDVSLVDGYNLPIAIAPRRGSGKCTYAGCISDLNLSCPPSLQVKNEQGCVMACKSACFAFSTPQYCCTGSYGNPQTCRPTSFSRLFKNACPRAYSYAYDDPNSLVTCSGADYLITFCP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
127	33			66	0.997461
131		66	33		0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain