SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene81350

Length: 454 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene81350
GGCTTAACCCTTTATTTGGGGCAAATTCTTCTTGTCATGGGTGTAAGGATATAACATTCAGCTGCAGCAAACGTGAAAGTGGACTGAACTCCAAGGACAGGAGCAGAGTAAGGTTGCGAAGCATCAGAAAATGGATTACAAAAGTCTGTTGCAGAGCGATGCCCTTTATGAGTATATATTGGAAACCAGCGTGTACCCTCGTGAGCCAGAGCCCTTGAAGGAGCTCCGGGAATTGACTATCAAACATCCCTGGCACGAGATGGCTATTCCTCCAGATGAAGGTCAATTTCTGAGCCTCCTGTTGAAGCTGATGAACGCCAAGAACACCATCGAGATTGGGGTGTACACTGGTTACTCACTTCTCAGCACAGCCCTTGCCTTACCCTGTGATGGAAAGATAATAGCGATGGACATTAACAGGGCGAATTATGATATGGGGCGACCTATCATTGAG

Ace file of the UniGene sp_v2.0_unigene81350

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caffeoyl-CoA-O-methyltransferase (Fragment) n=12 Tax=Pinus RepID=A4FT66_PINPS	-	-	5.0e-39	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	caffeoyl o-methyltransferase	-	-	0.0	88%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	O-methyltransferase, family 3	IPR002935	-	-
Sma3	Domain of unknown function DUF292, eukaryotic	IPR005061	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD15

Fln msg: Distance to subject end: 122 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 126 - 251

Fln protein: KWTELQGQEQSKVAKHQKMDYKSLLQSDALYEYILETSVYPREPEPLKELRELTIKHPWHEMAIPPDEGQFLSLLLKLMNAKNTIEIGVYTGYSLLSTALALPCDGKIIAMDINRANYDMGRPIIE

Protein Length: 127

Fln nts: GGCTTAACCCTTTATTTGGGGCAAATTCTTCTTGTCATGGGTGTAAGGATATAACATTCAGCTGCAGCAAACGTGAAAGTGGACTGAACTCCAAGGACAGGAGCAGAGTAAGGTTGCGAAGCATCAGAAAATGGATTACAAAAGTCTGTTGCAGAGCGATGCCCTTTATGAGTATATATTGGAAACCAGCGTGTACCCTCGTGAGCCAGAGCCCTTGAAGGAGCTCCGGGAATTGACTATCAAACATCCCTGGCACGAGATGGCTATTCCTCCAGATGAAGGTCAATTTCTGAGCCTCCTGTTGAAGCTGATGAACGCCAAGAACACCATCGAGATTGGGGTGTACACTGGTTACTCACTTCTCAGCACAGCCCTTGCCTTACCCTGTGATGGAAAGATAATAGCGATGGACATTAACAGGGCGAATTATGATATGGGGCGACCTATCATTGAG

Fln Alignment:

AllPineV4_rep_c136394___QGQEQSKVAKHQKMDYKSLLQSDALYEYILETSVYXXXXXXXXXXXXXTIKHPWHEMAIPPDEGQFLSLLLKLMNAKNTIEIGVYTGYSLLSTALALPCDGKIIAMDINRANYDMGRPIIE
D5AD15_______________QLQEKSKVALDHQMDNKSLLQSDALYQYILETNVYPREPEPLKELRQVTAKVPWNFMAIPPDEGQFLSLLLKLMNAKNTIEIGVYTGYSLLSTALALPEDGKIIAMDTDRRTYEIGRPIIE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
165		20		80	0.995493
166	20		80		0.995493
332		80	20		0.995493
333	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain