SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80711

Length: 372 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene80711
CGTCGTGACCTTGGCTGTCACTCATTTTATCATAGAGAACATCGGTTGTGGTTTATACGAGATGTAGAGCCACTTGTCGTGACCTTGGCTGTGATCGAGGTTCTTATCTTTATTTTGATCCAGTTACGTGGGAGAAGGATCGGAAGGACAACTTTTTGGTATACTACGAAAAGTTGGAGAACAGGCCTCATTTGCCTCAGCATTAGCAAAACCTGCTGCATTGTCCAAGACTGGAGATTCTCAAATTTTTACATTGTAATGTTCAATGTCCTGCCGAAGTAATATTTTGTTTTCATTCATTTTTTTAGTACAATGGAGAAATATTAATGCTTTATTTCTTGAGATAGAGCATGATAAACTAGTTGCCAGTTA

Ace file of the UniGene sp_v2.0_unigene80711

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Probable NOT transcription complex subunit VIP2; AltName: Full=Protein VIRE2 INTERACTING PROTEIN2; Short=NbVIP2 gb\|AAY15746.1\| VIP2 [Nicotiana benthamiana]	-	-	2.0e-11	62%
FL-Next	sp=Probable NOT transcription complex subunit VIP2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%
Blast2go	probable not transcription complex subunit vip2-like	-	-	3.43899e-12	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA integration	GO:0015074	Biological Process	3.43899e-12	75%
Blast2go	protein binding	GO:0005515	Molecular Function	3.43899e-12	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9FPW4

Fln msg: your sequence is shorter than subject: 94 - 614

Fln protein: RRDLGCHSFYHREHRLWFIRDVEPLVVTLAVIEVLIFILIQLRGRRIGRTTFWYTTKSWRTGLICLSISKTCCIVQDWRFSNFYIVMFNVLPK*

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTATCATAGAGAACATCGGTTGTGGTTTATACGAGATGTAGAGCCACTTGTCGTGACCTTGGCTGTGATCGAGGTTCTTATCTTTATTTTGATCCAGTTACGTGGGAGAAGGATCGGAAGGACAACTTTTTGGTATACTACGAAAAGTTGGAGAACAGGCCTCATTTGCCTCAGCATTAGCAAAACCTGCTGCATTGTCCAAGACTGGAGATTCTCAAATTTTTACATTGTAATGTTCAATGTCCTGCCGAAGTAA___TATTTTGTTTTCATTCATTTTTTTAGTACAATGGAGAAATATTAATGCTTTATTTCTTGAGATAGAGCATGATAAACTAGTTGCCAGTTA

Fln Alignment:

AllPineV4_rep_c133163___FYHREHRLWFIRDVEPLV
Q9FPW4_______________FYHKELRVWFFRVGEPLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain