SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80524

Length: 546 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene80524 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein CutA [Arabidopsis thaliana] sp\|P93009.1\|CUTA_ARATH RecName: Full=Protein CutA, chloroplastic; AltName: Full=Copper-binding protein CutA; Short=AtCUTA; Flags: Precursor gb\|AAK11228.1\|AF327524_1 copper-binding protein CUTA [Arabidopsis thaliana] gb\|	-	-	9.0e-33	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	3.29305e-43	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	copper ion binding	GO:0005507	Molecular Function	3.29305e-43	91%
Blast2go	chloroplast	GO:0009507	Cellular Component	3.29305e-43	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Divalent ion tolerance protein, CutA	IPR004323	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
253	20	80			0.995493
254	80			20	0.995493
477		28	14		1.0
478		28	71		1.0
479	57	28		14	1.0
482		20		80	0.995493
483	20			80	0.995493
485		20		80	0.995493
488	20		80		0.995493
489		80	20		0.995493
495			20	80	0.995493
496	20			80	0.995493
497	80	20			0.995493
513	25			75	0.996473
514		33	33		0.997753
517	75	25			0.996475
519			25	75	0.996473
521	66			33	0.997461
524		33		66	0.997461
525	66		33		0.997461
528			33	66	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain