SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80460

Length: 727 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene80460

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9RJZ6_RICCO	-	-	5.0e-14	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	pleiotropic drug resistance protein	-	-	9.88224e-14	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	terpenoid transport	GO:0046865	Biological Process	9.88224e-14	52%
Blast2go	response to organic substance	GO:0010033	Biological Process	9.88224e-14	52%
Blast2go	membrane	GO:0016020	Cellular Component	9.88224e-14	52%

Source	InterPros	Term	Type	e value	Identity
Sma3	ABC-2 type transporter	IPR013525	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
217		87		12	0.992555
250	88			11	0.923564
254		88	11		0.923564
255	11	88			0.923564
261			11	88	0.923564
263		11		88	0.923564
264	88			11	0.923564
266	88			11	0.923564
269			87	12	0.992554
270		11	88		0.92391
271	12			87	0.992554
358	90			10	0.90298
360	90		10		0.90298
361	90	10			0.90298
362	90			10	0.90298
366	11			88	0.923564
369	87	12			0.992554
372	85	14			0.993533
375		85		14	0.993533
376	14	85			0.993533
378	85		14		0.993533
380		83		16	0.994512
381	16	83			0.994512
384		83	16		0.994512
388	16		83		0.994512
390		85	14		0.993533
428		14	85		0.993534
436		14		85	0.993534
437		14	85		0.993535
438			85	14	0.993537
443	83	16			0.994512
450		16		83	0.994512
452	83	16			0.994512
453	16			83	0.994512
464		85	14		0.993533
513	20	80			0.995493
518	80		20		0.995494
519		20		80	0.995494

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain