SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80194

Length: 438 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene80194
CGTCGTGACCTTGGCTGTCACTCAAGGAATGCCTGGTGATGTTGATATGAGCAACATCTTGAATGATCCAGAGCTGATGGCTGCATTCAGTGATCCAGATGTAATGACAGCACTTCAAGATGTGATGAAGAATCCTGCAAACTTGAAGTGCTGTCATTACATCTGGATCACTGAATGCAGCCATCAGCTCTGGATCATTCAAGATGTTGCTCATATCAACATCACCAGGCATTCCTCCTGGGAAGCCACCAGGCATTCCACCTGCAGGCATTCCTCCTGGGAAGCCACCAGGCATTCCACCTGCAGGCATACCACCTGGGAAGCCACCAGGCATCCCACCTGAGCAGCCACCAGGCATCCCACCTGAGCAGCCACCAGTAGCCCCACATGGTTTACACGTGGAGGTTTTCTCTTTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v2.0_unigene80194

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HSP associated protein like [Arabidopsis thaliana] emb\|CAB79222.1\| HSP associated protein like [Arabidopsis thaliana]	-	-	2.0e-11	82%
FL-Next	sp=FAM10 family protein At4g22670; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	82%
Blast2go	hsp associated protein like	-	-	1.77123e-15	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	1.77123e-15	89%

Source	InterPros	Term	Type	Identity
Sma3	Oleosin	IPR000136	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Heat shock chaperonin-binding	IPR006636	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q93YR3

Fln msg: your sequence is shorter than subject: 114 - 441

Fln protein: VVTLAVTQGMPGDVDMSNILNDPELMAAFSDPDVMTALQDVMKNPANLKCCHYIWITECSHQLWIIQDVAHINITRHSSWEATRHSTCRHSSWEATRHSTCRHTTWEATRHPT*

Protein Length: 115

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGAATGCCTGGTGATGTTGATATGAGCAACATCTTGAATGATCCAGAGCTGATGGCTGCATTCAGTGATCCAGATGTAATGACAGCACTTCAAGATGTGATGAAGAATCCTGCAAACTTGAAGTGCTGTCATTACATCTGGATCACTGAATGCAGCCATCAGCTCTGGATCATTCAAGATGTTGCTCATATCAACATCACCAGGCATTCCTCCTGGGAAGCCACCAGGCATTCCACCTGCAGGCATTCCTCCTGGGAAGCCACCAGGCATTCCACCTGCAGGCATACCACCTGGGAAGCCACCAGGCATCCCACCTGA___GCAGCCACCAGGCATCCCACCTGAGCAGCCACCAGTAGCCCCACATGGTTTACACGTGGAGGTTTTCTCTTTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

AllPineV4_rep_c130532___GMPGDVDMSNILNDPELMAAFSDPDVMTALQDVMKNPANL
Q93YR3_______________GMPGGMDFSKILNDPELMTAFSDPEVMAALQDVMKNPANL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain