SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80166

Length: 663 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene80166

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	T-complex protein 1 subunit epsilon n=6 Tax=core eudicotyledons RepID=TCPE_ARATH	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	t-complex protein 1 subunit epsilon	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	92%

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	T-complex protein 1, delta subunit	IPR012717	-	-
Sma3	T-complex protein 1, epsilon subunit	IPR012718	-	-
Sma3	Chaperone, tailless complex polypeptide 1	IPR017998	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
403	66			33	0.997464
404		33	66		0.997464

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain