SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80139

Length: 928 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene80139

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	O-acetyltransferase-like protein [Arabidopsis thaliana] ref\|NP_001031478.1\| O-acetyltransferase-like protein [Arabidopsis thaliana] gb\|AAU05470.1\| At2g34410 [Arabidopsis thaliana] gb\|AAV59284.1\| At2g34410 [Arabidopsis thaliana] dbj\|BAD94920.1\| hypothetica	-	-	77%
FL-Next	tr=O-acetyltransferase family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	77%
Blast2go	o-acetyltransferase-like protein	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Cas1p 10 TM acyl transferase domain	IPR012419	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7LH04

Fln msg: Separated hits, possible frame ERROR between 553 and 621, your sequence is shorter than subject: 296 - 540

Fln protein: VVTLAVTQGSVIALKIAICFLVVIVVWELPGMFDLVWSPLTFLLGYSDPNPNKPSYPRLHEWHFRSGLDRYIWIIGMIYAYYHPTVERWMEKLEEMEGKLRMLIKGIVVMACLVVGYLWYEHIYRLDKNTYNKYHPYTSWIPITVYICLRNVTQKFRNFSLTLFAWLGKITLETYIAQFHIWLxxxxxxxxxxxxxxxxxxxxxxxxRTGTPNGQPRWLLCIIPGYPMVNFMLTTAVYILVTYRLFELTNKLKSTFIPSKDDKRLLHNTMAAAALSLFLYGSAWLLVTIPKMAGL*

Protein Length: 297

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGATCAGTAATTGCATTGAAGATTGCAATTTGCTTTCTAGTGGTTATTGTGGTTTGGGAGTTGCCAGGCATGTTTGACCTTGTTTGGAGCCCCTTGACATTTCTTTTGGGTTATTCTGATCCAAACCCAAATAAGCCTAGTTACCCACGTCTGCACGAATGGCATTTCAGATCAGGGCTTGATCGCTATATCTGGATCATTGGAATGATTTATGCATACTATCATCCTACCGTTGAAAGGTGGATGGAAAAATTGGAGGAAATGGAAGGGAAGCTAAGAATGCTAATCAAGGGAATCGTTGTGATGGCCTGTTTAGTGGTTGGATATCTGTGGTATGAACATATATATAGGCTGGACAAGAACACTTATAACAAATATCACCCATATACATCGTGGATCCCGATAACTGTATACATTTGCCTTCGGAATGTGACACAAAAGTTCCGAAACTTTTCTCTAACACTTTTTGCATGGCTTGGAAAAATAACTTTGGAGACATACATTGCTCAATTTCACATCTGGTTGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAGAACTGGAACACCTAATGGACAACCTCGATGGTTACTTTGTATTATTCCGGGCTATCCAATGGTTAATTTTATGTTAACCACTGCTGTGTATATCCTGGTAACATATCGTCTCTTTGAGTTGACAAACAAACTAAAATCTACATTCATTCCAAGTAAAGATGACAAGCGCCTTCTCCATAATACAATGGCAGCTGCTGCATTGTCTCTTTTCTTGTATGGGTCAGCTTGGCTCTTGGTCACTATTCCTAAGATGGCAGGATTATAATATGGAATCTTGGCAAAGCTTGCTATACCTGTGACCTATGG

Fln Alignment:

AllPineV4_rep_c130241___SVIALKIAICFLVVIVVWELPGMFDLVWSPLTFLLGYSDPNPNKPSYPRLHEWHFRSGLDRYIWIIGMIYAYYHPTVERWMEKLEEMEGKLRMLIKGIVVMACLVVGYLWYEHIYRLDKNTYNKYHPYTSWIPITVYICLRNVTQKFRNFSLTLFAWLGKITLETYIAQFHIWLRxxxxxxxxxxxxxxxxxxxxxxxRTGTPNGQPRWLLCIIPGYPMVNFMLTTAVYILVTYRLFELTNKLKSTFIPSKDDKRLLHNTMAAAALSLFLYGSAWLLVTIP
D7LH04_______________SVMVLKIASCFLVVIVMWEIPGVFEIFWSPLTFLLGYTDPA--KPDLPLLHEWHFRSGLDRYIWIIGMIYAYFHPTVERWMEKLEEFDAKRKMSIKTSIIAISSFVGYLWYEYIYKLDKVTYNKYHPYTSWIPITVYICLRNSTQQLRNFSLTLFAWLGKITLETYISQFHIWLRxxxxxxxxxxxxxxxxxxxxxxxRSNVPNGQPKWLLCIIPEYPMLNFMLVTAIYVLVSHRLFELTNTLKSVFIPTKDDKRLLHNVLAGAAISFCLYLTALILLQIP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
578	20			80	0.995493
581		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain