SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80058

Length: 677 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene80058

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] gb\|AAL11599.1\|AF424605_1 AT4g31450/F3L17_20 [Arabidopsis thaliana] gb\|AAN73297.1\| At4g31450/F3L17_20 [Arabidopsis thaliana] gb\|AEE85915.1\| RING/U-box domain-containing protein [Arabidopsis thalia	-	-	3.0e-29	46%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	59%
Blast2go	protein	-	-	5.60519e-44	72%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Aspartate/ornithine carbamoyltransferase	IPR006130	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
157	66		33		0.997458
158	66			33	0.997458
159		66	33		0.997458
162	66	33			0.997458
166	50		50		0.997753
171		50		50	0.997753
173	50		50		0.997753
206			16	83	0.999991
207	66	8		16	0.999991
209			16	83	0.999991
210	66		16	16	0.999991
213		25		75	1.0
218	66	25		8	1.0
219		8	66	25	1.0
221	75			16	0.99999
222		16	75	8	0.99999
223	18	81			0.999994
224		18	72		0.999994
225		18	72		0.999994
387			88	11	0.923564
391	11		88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain