SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene80009

Length: 951 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene80009 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	vacuolar protein sorting-associated protein 32-2 [Arabidopsis thaliana] ref\|NP_001078468.1\| vacuolar protein sorting-associated protein 32-2 [Arabidopsis thaliana] sp\|Q9SZE4.1\|VP322_ARATH RecName: Full=Vacuolar protein sorting-associated protein 32 homolo	-	-	1.0e-38	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	vacuolar protein sorting-associated protein 32-2	-	-	0.0	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	91%

Source	InterPros	Term	Type	Identity
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Snf7	IPR005024	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	Seryl-tRNA synthetase, class IIa, N-terminal	IPR015866	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
865	86		13		0.999973
866	14			85	0.999981
867			14	85	0.999981
871	84	15			0.999986
873	84		15		0.999986
874		16		83	0.999991
877		7	76		0.999983
879	75		25		1.0
880			83	16	0.999991
881			83	16	0.999991
882	83	16			0.999991
884	83	16			0.999991
890			10	90	0.903175
893	90	10			0.903229
895		16		83	0.994519
896			20	80	0.9955
897	60	20			0.99255
898		50		50	1.0
899		20	40	40	1.0
900	25	25		50	0.995595
901	25		25	50	0.995536
903			33	66	0.997453
904	33			66	0.997453
906		33		66	0.997453
916	66		33		0.997461
921	66		33		0.997461
922	33			66	0.997461
924			33	66	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain