SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79850

Length: 347 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene79850
CGTCGTGACCTTGGCTGTCACTCAATTAGTTATCCTACAATTGCAGCTGTTCCACATGCTATCATTCGTGGTTACTTGGCTGTCTCTCAGTTGCTATTGAACTTGATTATTCTTTTCCACTGGCCGAGAAAGTTAAGGAGTATTTGAAGGATCCAAGCAAGTTTGCAGTTGCTGCTGCCCCAGTTGCTGGTGCTACAGAAGCTGCACCTGCTGCGGCTGCTCCAAAGGAGAGGAAAAGAAACCTGAGCCAGAGGAAGAGTCCGAAGAGGATATGGGTTTCAGTCTTTTTGACTAGATTGGAGGATTTCACAGCACAAATCATTAGAATTGATAATTTTAAGACAATT

Ace file of the UniGene sp_v2.0_unigene79850

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S acidic ribosomal protein P0 [Zea mays] sp\|O24573.3\|RLA0_MAIZE RecName: Full=60S acidic ribosomal protein P0 emb\|CAA69256.1\| 60S acidic ribosomal protein P0 [Zea mays]	-	-	3.0e-08	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	60s acidic ribosomal protein expressed	-	-	3.36769e-07	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L10/acidic P0	IPR001790	-	0.0	-
Sma3	Ribosomal protein 60S	IPR001813	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9F2

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 18 aas, your sequence is shorter than subject: 115 - 266

Fln protein: S*PWLSLN*LSYNCSCSTCYHSWLLGCLSVAIELDYSFPLAEKVKEYLKDPSKFAVAAAPVAGATEAAPAAAAPKERKRNLSQRKSPKRIWVSVFLTRLEDFTAQIIRIDNFKTI

Protein Length: 116

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTAGTTATCCTACAATTGCAGCTGTTCCACATGCTATCATTCGTGGTTACTTGGCTGTCTCTCAGTTGCTATTGAACTTGATTATTCTTTTCCACTGGCCGAGAAAGTTAAGGAGTATTTGAAGGATCCAAGCAAGTTTGCAGTTGCTGCTGCCCCAGTTGCTGGTGCTACAGAAGCTGCACCTGCTGCGGCTGCTCCAAAGGAGAGGAAAAGAAACCTGAGCCAGAGGAAGAGTCCGAAGAGGATATGGGTTTCAGTCTTTTTGACTAGATTGGAGGATTTCACAGCACAAATCATTAGAATTGATAATTTTAAGACAATT

Fln Alignment:

AllPineV4_rep_c128617___LSVAIELDYSFPLAEKVKEYLKDPSKF
D5A9F2_______________LAIAIELDYSFPLAEKVKEYLKDPSKF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain