SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79819

Length: 471 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene79819
TGAGGGTGGTTGATGATAGGAACAGTGGGACTGCAAAGCATAAGGATTAGTTGAGTTAGTTCCAGTGCAATGGTTTCCAAAATATGGGTTCAAACTTCATCTCCCTCTTGTGCTGCCAATTGTCCAATTATCCATAGTTCATGATACTTTGACTATCTCTTCTATGTTGACTTTGAAGCCTCTATGGCTGATCTACGAGCACAAAATGCATTAAGTCACCTACAGGAGTTTGCAACGTTCCTCCGAGTACTGGGTAGCTATCCAATTGACACGACCCCCATGAATCATCCTGCAGTTTCATAGGCTTACAGATCATTGGTTCAAACTTCAAAGGTTTCTACCCTTGTGAAGCACATTGTTTTCCACTGCCCTACTTCATGGCTGAGTGAACAGACATTTTGGCCTCTGCTTATTTATCCTCGGCGTCTTGTCAAGGAGATTGCATTCCAGAGGTTCCCGCAGTGCTCAGTT

Ace file of the UniGene sp_v2.0_unigene79819

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Prephenate dehydratase with ACT region [Medicago truncatula]	-	-	7.0e-16	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	arogenate dehydratase 2	-	-	9.69903e-20	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arogenate dehydratase.	EC:4.2.1.91	-	9.69903e-20	89%

Source	KEGGs	Term	e value	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	9.69903e-20	89%
Blast2go	Biosynthesis of phenylpropanoids	01061	9.69903e-20	89%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	9.69903e-20	89%
Blast2go	Biosynthesis of plant hormones	01070	9.69903e-20	89%
Blast2go	Metabolic pathways	01100	9.69903e-20	89%
Blast2go	Biosynthesis of secondary metabolites	01110	9.69903e-20	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	small molecule metabolic process	GO:0044281	Biological Process	9.69903e-20	89%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	9.69903e-20	89%
Blast2go	arogenate dehydratase activity	GO:0047769	Molecular Function	9.69903e-20	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	9.69903e-20	89%

Source	InterPros	Term	Type	Identity
Sma3	Prephenate dehydratase	IPR001086	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Prephenate dehydratase, conserved site	IPR018528	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ85

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 101 - 402

Fln protein: *GWLMIGTVGLQSIRIS*VSSSAMVSKIWVQTSSPSCAANCPIIHSS*YFDYLFYVDFEASMADLRAQNALSHLQEFATFLRVLGSYPIDTTPMNHPAVS*

Protein Length: 102

Fln nts: TGAGGGTGGTTGATGATAGGAACAGTGGGACTGCAAAGCATAAGGATTAGTTGAGTTAGTTCCAGTGCAATGGTTTCCAAAATATGGGTTCAAACTTCATCTCCCTCTTGTGCTGCCAATTGTCCAATTATCCATAGTTCATGATACTTTGACTATCTCTTCTATGTTGACTTTGAAGCCTCTATGGCTGATCTACGAGCACAAAATGCATTAAGTCACCTACAGGAGTTTGCAACGTTCCTCCGAGTACTGGGTAGCTATCCAATTGACACGACCCCCATGAATCATCCTGCAGTTTCATAG___GCTTACAGATCATTGGTTCAAACTTCAAAGGTTTCTACCCTTGTGAAGCACATTGTTTTCCACTGCCCTACTTCATGGCTGAGTGAACAGACATTTTGGCCTCTGCTTATTTATCCTCGGCGTCTTGTCAAGGAGATTGCATTCCAGAGGTTCCCGCAGTGCTCAGTT

Fln Alignment:

AllPineV4_rep_c128427___YFDYLFYVDFEASMADLRAQNALSHLQEFATFLRVLGSYPIDTTP
B8LQ85_______________YFDYLFYIDFEASMADPRAQNALGHLQEFATFMRVLGSYPMDMTP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain