SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene79295

Length: 413 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene79295
CGTCGTGACCTTGGCTGTCACTCAATTAGCTGCAGCAGAAATAATTTTTGATGCTTGCATTCTTAAACCAAGTTCTTGAAGGTATAAATTTGGATTTTGTGAAGTGCAGGTAGGCCAGTAGGTTAGGATGAGGCAACCGGAGGAAGCGGCAGGTGGCCGTGGCAGAGGCAAGCCCAAGGCGCGCGTCAAAAGTATTTCCATATCAAAATCGAGCAAGGCAGGGCTTCAGTTCCCGGTCGGCAGAATTGCCAGATTCCTTAAGCGCGGTCGTTACGCAGAACGCGTTGGTGCCAGTGCCCCAGTTTACTTGGCTGCTGTTATGGAGTACCTAGCTGCAGAGGTGCTGGAGTTGGCTGGGAATGCTGCCAGAGATAACAAGAAGTCTCGAATAATTCCACGGCACATTCAACTTG

Ace file of the UniGene sp_v2.0_unigene79295

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2A n=4 Tax=Chlorella variabilis RepID=E1ZCE3_9CHLO	-	-	2.0e-26	90%
FL-Next	sp=Histone H2A; Pinus pinaster (Maritime pine).	-	-	0.0	90%
Blast2go	histone h2a	-	-	9.47383e-34	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	9.47383e-34	96%
Blast2go	response to wounding	GO:0009611	Biological Process	9.47383e-34	96%
Blast2go	response to bacterium	GO:0009617	Biological Process	9.47383e-34	96%
Blast2go	protein binding	GO:0005515	Molecular Function	9.47383e-34	96%
Blast2go	nucleolus	GO:0005730	Cellular Component	9.47383e-34	96%
Blast2go	cell wall	GO:0005618	Cellular Component	9.47383e-34	96%

Source	InterPros	Term	Type	Identity
Sma3	Histone H2A	IPR002119	-	-
Sma3	BSD	IPR005607	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q711T3

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 95 - 138

Fln protein: MRQPEEAAGGRGRGKPKARVKSISISKSSKAGLQFPVGRIARFLKRGRYAERVGASAPVYLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHIQL

Protein Length: 96

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTAGCTGCAGCAGAAATAATTTTTGATGCTTGCATTCTTAAACCAAGTTCTTGAAGGTATAAATTTGGATTTTGTGAAGTGCAGGTAGGCCAGTAGGTTAGG_-_ATGAGGCAACCGGAGGAAGCGGCAGGTGGCCGTGGCAGAGGCAAGCCCAAGGCGCGCGTCAAAAGTATTTCCATATCAAAATCGAGCAAGGCAGGGCTTCAGTTCCCGGTCGGCAGAATTGCCAGATTCCTTAAGCGCGGTCGTTACGCAGAACGCGTTGGTGCCAGTGCCCCAGTTTACTTGGCTGCTGTTATGGAGTACCTAGCTGCAGAGGTGCTGGAGTTGGCTGGGAATGCTGCCAGAGATAACAAGAAGTCTCGAATAATTCCACGGCACATTCAACTTG

Fln Alignment:

AllPineV4_rep_c125528___AGLQFPVGRIARFLKRGRYAERVGASAPVYLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHIQL
Q711T3_______________AGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain