SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78935

Length: 719 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene78935 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Photosystem II 22 kDa protein, chloroplastic n=7 Tax=Solanaceae RepID=PSBS_SOLLC	-	-	9.94922e-44	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	chloroplast chlorophyll a b-binding protein	-	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	nonphotochemical quenching	GO:0010196	Biological Process	90%
Blast2go	xanthophyll binding	GO:0051738	Molecular Function	90%
Blast2go	chlorophyll binding	GO:0016168	Molecular Function	90%
Blast2go	PSII associated light-harvesting complex II	GO:0009517	Cellular Component	90%
Blast2go	response to karrikin	GO:0080167	Biological Process	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
353	66		33		0.997458
407		33	66		0.997452
413		66		33	0.997452
416		66		33	0.997452
417		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain