SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78847

Length: 572 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene78847
GCGAGCTTCTCTCCCTTCACAGCGAGCTTCTCTCCCTTCTGGCAGTGGGTTAGATTGCCGCTGTGGCCCCATTCTTCGGATGCAGTGGCAATTTCAACAGCCGGTGCCGCCATGATCGTATTAAGTGGCATTTCAGTTAGATCTGCCACAGAAAATTGTAGGTTCCATTACAGAAATATTCATAATCGTATCGAGTCTATAATGCTGGAAAGGTGCTTGTTCGTCATTATATTTGGAGTTAGATAATCAGAAGAGGTGGGGTTCTTCTAATAAGGATGTTCTCATAAGATCACAGATTCCAGAGACGTCGATTTACAGGCTACAAGGTCTCGAACCAGAGCATTCCCGAGAGCTCTTTTGCTGGCATGCATTTGGCAGGCCTCATCCTGCTGTCGGATTTCGGGTCCCTTCTGCTTTCTTTGTTTACGGCCCACGCGAGTTGGTGGTGCATTTCTTCTCCTTCTTGTCGTCCTGCTTGTGGTCGTCTGGGGATCCCTTGCGATTCAGGCCACCGCCGTGCGCTTGCCCCATTGCCTCATTCGAACTCGGACCAGAATTCGACCTGTGAAATG

Ace file of the UniGene sp_v2.0_unigene78847

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative NBS-LRR protein G6236 (Fragment) n=2 Tax=Pinus monticola RepID=Q6WE71_PINMO	-	-	2.0e-10	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	nbs-lrr protein g6236	-	-	6.18011e-12	74%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 608 aas, your sequence is shorter than subject: 189 - 1071

Fln protein: RASLPSQRASLPSGSGLDCRCGPILRMQWQFQQPVPP*SY*VAFQLDLPQKIVGSITEIFIIVSSL*CWKGACSSLYLELDNQKRWGSSNKDVLIRSQIPETSIYRLQGLEPEHSRELFCWHAFGRPHPAVGFRVPSAFFVYGPRELVVHFFSFLSSCLWSSGDPLRFRPPPCACPIASFELGPEFDL*

Protein Length: 190

Fln nts: GCGAGCTTCTCTCCCTTCACAGCGAGCTTCTCTCCCTTCTGGCAGTGGGTTAGATTGCCGCTGTGGCCCCATTCTTCGGATGCAGTGGCAATTTCAACAGCCGGTGCCGCCATGATCGTATTAAGTGGCATTTCAGTTAGATCTGCCACAGAAAATTGTAGGTTCCATTACAGAAATATTCATAATCGTATCGAGTCTATAATGCTGGAAAGGTGCTTGTTCGTCATTATATTTGGAGTTAGATAATCAGAAGAGGTGGGGTTCTTCTAATAAGGATGTTCTCATAAGATCACAGATTCCAGAGACGTCGATTTACAGGCTACAAGGTCTCGAACCAGAGCATTCCCGAGAGCTCTTTTGCTGGCATGCATTTGGCAGGCCTCATCCTGCTGTCGGATTTCGGGTCCCTTCTGCTTTCTTTGTTTACGGCCCACGCGAGTTGGTGGTGCATTTCTTCTCCTTCTTGTCGTCCTGCTTGTGGTCGTCTGGGGATCCCTTGCGATTCAGGCCACCGCCGTGCGCTTGCCCCATTGCCTCATTCGAACTCGGACCAGAATTCGACCTGTGAAATG

Fln Alignment:

AllPineV4_rep_c123193___SSNKDVLIRSQIPETSIYRLQGLEPEHSRELFCWHAFGRPHPAVGF
C0PQE2_______________SRNKDVLTSSGITESSIYRLKGLNRKHSQELFCFHAFGQPHPVVGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain