SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78825

Length: 467 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene78825
CGTCGTGACCTTGGCTGTCACTCATTTTTTCTTCTTCGTTTCTTGAAGAGGAGGAGGTGAGGAAACGCCCTCCGGATGCAGATCGGGTCGAAGGCCGACCAAATTCGAACGCACGACCTCTAGATCGTCTCAGCACGTCCATGGGGTTTATTTTATCGGGAAATCTGACTATATATGCGTACTAGGGTTTTAAGAATTATTTTACCCGTTCTGCTTGCGGAGCTCAACCTTTTGACAAATTTAGCAATATTTTAATCAGGAAAGTAGCTTATAGGCATCCGGCCATCTGAGTATCCATGGATAGCAACAAAGACGACGCCTTGAAATGCCTGAACATCGGCAAAGCGGCCATCGCAGCCGGAGACACAAACCGTGCACTCGCATTGTGTGAAGGCCCTTCGCCTGGATCCTAGTCTCTCCCTAGACGAGCTCCTGGCAGCATGCGCTGAAGATGCTAATAACGGTAA

Ace file of the UniGene sp_v2.0_unigene78825

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Domain of unknown function DUF1977, DnaJ-like	IPR015399	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV01

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 304 aas, your sequence is shorter than subject: 39 - 361

Fln protein: MDSNKDDALKCLNIGKAAIAAGDTNRALALCEGPSPGS*

Protein Length: 40

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTCTTCTTCGTTTCTTGAAGAGGAGGAGGTGAGGAAACGCCCTCCGGATGCAGATCGGGTCGAAGGCCGACCAAATTCGAACGCACGACCTCTAGATCGTCTCAGCACGTCCATGGGGTTTATTTTATCGGGAAATCTGACTATATATGCGTACTAGGGTTTTAAGAATTATTTTACCCGTTCTGCTTGCGGAGCTCAACCTTTTGACAAATTTAGCAATATTTTAATCAGGAAAGTAGCTTATAGGCATCCGGCCATCTGAGTATCC_-_ATGGATAGCAACAAAGACGACGCCTTGAAATGCCTGAACATCGGCAAAGCGGCCATCGCAGCCGGAGACACAAACCGTGCACTCGCATTGTGTGAAGGCCCTTCGCCTGGATCCTAGTCTCTCCCTAGACGAGCTCCTGGCAGCATGCGCTGAAGATGCTAATAACGGTAA

Fln Alignment:

AllPineV4_rep_c123107___MDSNKDDALKCLNIGKAAIAAGDTNRA
A9NV01_______________MDSNKDDALKCLNIGKAAIAAGDTNRA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
28		33		66	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain