SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78713

Length: 1113 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene78713

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T6C0_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	sex determination protein tasselseed-2-like	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	2-5-oligoadenylate synthetase, N-terminal	IPR006116	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMZ3

Fln msg:

Fln protein: MSNKEFNGAADNMGSLHGSERRLEGKVAIITGGAMGIGEAIVRLFTKHGARVIIADIADETGKVLAECLSPPAIYVYCDVSKEQDVSAAVDLAIEKYGQLDIMFNNAGTAPTALVKGVTEYDMEQFDRVMKVNVRGVMLGIKHAGRVMIPRKNGTIISTGSVAGIIGGGNSYSYAASKHAVIGLTKNGAAELGKYGIRVNILSPYGVATPLAVQSLKMDDASSVEAFFGTLANLQGVTLKVEDIAEAALYLASNEAKYVSGHNLVVDGGITVVNHSWGLYR*

Protein Length: 283

Fln nts: GTTTCTAGGCCATAATAAGTAGACCTAGCTAGGCCTTGCTTCTGCCGAATATTAACTGAGCTGGTGCTACTCGTTTTCTACAATCTGGGGCTCCCTTCTTTCTGCATCATCCAATTATCCGAGTTTGCTACCCAGTC_-_ATGTCTAACAAAGAATTTAATGGAGCTGCTGACAATATGGGCTCGCTGCACGGATCGGAGCGAAGGTTGGAGGGCAAGGTCGCAATAATAACGGGCGGGGCAATGGGTATCGGAGAAGCCATCGTTCGGCTCTTCACAAAGCACGGAGCCAGAGTCATAATCGCAGACATTGCAGATGAAACCGGCAAAGTTCTGGCCGAATGCCTTTCACCCCCCGCCATTTACGTGTACTGCGATGTGAGCAAAGAGCAAGACGTCAGCGCTGCGGTGGATTTGGCCATCGAGAAATACGGGCAGCTCGATATCATGTTTAACAACGCGGGAACTGCTCCTACCGCTCTGGTTAAGGGCGTAACGGAGTACGACATGGAGCAATTCGATAGAGTAATGAAGGTAAACGTGAGAGGAGTGATGCTGGGCATTAAACACGCGGGCCGCGTGATGATTCCGCGGAAGAATGGCACCATAATCTCCACCGGCAGCGTTGCGGGGATAATAGGAGGAGGTAATTCATACTCATACGCCGCCTCCAAACATGCAGTGATAGGGCTCACAAAGAATGGAGCAGCTGAGCTTGGGAAGTACGGCATCAGAGTCAATATTCTCTCTCCTTATGGCGTGGCTACCCCTCTTGCAGTCCAGAGCCTAAAAATGGACGATGCCTCCTCAGTAGAGGCCTTCTTCGGGACCCTCGCCAACTTACAGGGAGTGACACTTAAAGTGGAGGATATTGCGGAGGCCGCGCTGTATTTGGCGAGCAATGAGGCTAAGTATGTTAGCGGGCATAACCTGGTCGTTGATGGAGGAATAACTGTTGTTAATCACTCCTGGGGACTCTACAGGTGA___TAGTTCTTTATGCGAATTCTCTATAGGACTCTTGCAATGTCACTTGATCATTTTGTGCACGGCTCATTCCTCTCTGCAATCCACAAATTAATAAAACTGCTCTGTCGTTATCAGATCCAATAGCTGTAAT

Fln Alignment:

AllPineV4_rep_c122496___MSNKEFNGAADNMGSL--HGSERRLEGKVAIITGGAMGIGEAIVRLFTKHGARVIIADIADETGKVLAECLSPPAIYVYCDVSKEQDVSAAVDLAIEKYGQLDIMFNNAGTAPTALVKGVTEYDMEQFDRVMKVNVRGVMLGIKHAGRVMIPRKNGTIISTGSVAGIIGGGNSYSYAASKHAVIGLTKNGAAELGKYGIRVNILSPYGVATPLAVQSLKMDDASS-------VEAFFGTLANLQGVTLKVEDIAEAALYLASNEAKYVSGHNLVVDGGITVVNHSWGLYR
A9NMZ3_______________MSIEEVNEAAVCVGNLSFNGSERRLESKVAIITGGAAGIGEAIVRLFTKHGAKVIIADIADEAGRTLAESLSPPATYLHCDVSKEQDISAAVDLAMEKHGQLDIMYNNAGINDSVMVKGVAEYDMEQFDRVMSVNVRGVMLGIKHAARVMIPRKKGCIISTGSVAGILGGAR-YSYTASKHAVIGLTKNGAAELGKFGIRVNAVSPYALVTALTVQNFRQGDSNSEEAAMATAEAFYNSFANLQGTTLKAKDVAEAGLYLASDEAKYVSGHNLVVDGGFSVANHSWRLYR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
733	85		14		0.993533
745		57	42		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain