SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78567

Length: 541 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene78567
CACAAGGCGATAATGTGAACATCGTCGTCATCAGAGAGAACACCGAGGGCGAGTACTCTGGTTTGGAACACGAGGTCGTTCCGGGCGTCGTCGAAAGTCTAAAGTTCTGCTCAGAGCGGATTGCCAAGTATGCATTTGAATATGCATATCTCAACAATAGGAAGACAGTGACAGCAGTGCACAAGGCCAATATCATGAAGCTTGCAGATGGATTATTCCTGGAATCCTGTCGTGAAGTTGCAACGAAATACCCAGGAATCAAGTATAATGAGATCATTGTTGATAACTGCTGCATGCAACTTGTTTCAAAACCTGAGCAATTTGATGTGATGGTTACTCCAAATTTGTATGGTAATTTGGTTGCAAACACTGCAGCTGGTATCGCAGGTGGTACTGGAGTTATGCCAGGAGGAAATGTTGGTGCAGAACATGCCATTTTTGAGCAAGGAGCTTCAGCAGGGAATGTTGGAAATGAAAAGCTGGTTTTACAGAAAATGGCTAATCCTGTGGCAGTCTTATTATCTTCTGCGATGATGACATT

Ace file of the UniGene sp_v2.0_unigene78567 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAD-dependent isocitrate dehydrogenase [Nicotiana tabacum]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	isocitrate dehydrogenase	-	-	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Isocitrate/isopropylmalate dehydrogenase	IPR001804	-	0.0	-
Sma3	Isocitrate dehydrogenase NAD-dependent	IPR004434	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPK1

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 179 - 378

Fln protein: QGDNVNIVVIRENTEGEYSGLEHEVVPGVVESLKFCSERIAKYAFEYAYLNNRKTVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEHAIFEQGASAGNVGNEKLVLQKMANPVAVLLSSAMMT

Protein Length: 180

Fln nts: CACAAGGCGATAATGTGAACATCGTCGTCATCAGAGAGAACACCGAGGGCGAGTACTCTGGTTTGGAACACGAGGTCGTTCCGGGCGTCGTCGAAAGTCTAAAGTTCTGCTCAGAGCGGATTGCCAAGTATGCATTTGAATATGCATATCTCAACAATAGGAAGACAGTGACAGCAGTGCACAAGGCCAATATCATGAAGCTTGCAGATGGATTATTCCTGGAATCCTGTCGTGAAGTTGCAACGAAATACCCAGGAATCAAGTATAATGAGATCATTGTTGATAACTGCTGCATGCAACTTGTTTCAAAACCTGAGCAATTTGATGTGATGGTTACTCCAAATTTGTATGGTAATTTGGTTGCAAACACTGCAGCTGGTATCGCAGGTGGTACTGGAGTTATGCCAGGAGGAAATGTTGGTGCAGAACATGCCATTTTTGAGCAAGGAGCTTCAGCAGGGAATGTTGGAAATGAAAAGCTGGTTTTACAGAAAATGGCTAATCCTGTGGCAGTCTTATTATCTTCTGCGATGATGACATT

Fln Alignment:

AllPineV4_rep_c121593___DNVNIVVIRENTEGEYSGLEHEVVPGVVESLK----FCSERIAKYAFEYAYLNNRKTVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVXXXXXXXXXXXXXXXXXXXGAEHAIFEQGASAGNVGNEKLVLQKMANPVAVLLSSAMM
B8LPK1_______________DNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRRTVTAVHKANIMKLADGLFLESSREVAKKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAIFEQGASAGNVGNEKLVVKKRANPVALLLSSAMM

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
378	33			66	0.997452
379	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain