SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78501

Length: 1766 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene78501

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nutrient reservoir, putative n=1 Tax=Ricinus communis RepID=B9SYN6_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	glutelin type-a	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	11-S seed storage protein, plant	IPR006044	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE20

Fln msg:

Fln protein: MEAPPKRVLTPAEPKKILSSEGGSYYAWASSDLCMLAEAKVGAAKLLLNHRGLALPKYSDSSKVGYVLQGSGVAGILIPEAESERVVKIRKGDAIAVPMGVISWWFNDNPSEVLEILFLGDTSKAHRSGEFTDFHLMGGSNGLFHGFSKEFVSRAWDLEEDKVEHLLKSQSGTGIVQLKEGKSLPTPESQEGDKLSLVFNCEEAKLDVDIKNGGRVVVLTGDYLPLLEEIGLGADLVKLDPAAMCSPGFSSDSAFQVTYITRGHGRAQVVGIDGVRVLEAEVKAGFLFIVPRFFVVSKIAGDEGLEWFSIITTPKPIFCHLAGRTSVWKALSKEILTASFDVDEKIEQHFRSKRMQDAIFFPPSTN*

Protein Length: 368

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGATCGATGGATAGAGCCTAAGGTACAAACCTTCCTCGTATCGCTTGGGACAAGGTCGGATATCTATATATACATTCCTTATTTCTTGTATTTCTTCACCAGCTTCCTGCACCAGTTTATGCAGTCTTGCTCTTTTGGTGTCTATTGCTTGTAAAGCTGATTCTAAAGAATTACATAAAGAGAGGAGAAA_-_ATGGAGGCCCCTCCCAAGAGAGTCTTGACCCCGGCTGAGCCCAAGAAGATCCTGAGTTCAGAAGGAGGGTCTTATTATGCATGGGCAAGTTCAGATCTCTGCATGTTAGCAGAAGCCAAAGTTGGAGCAGCCAAGCTGCTTCTCAATCATCGTGGCCTGGCTTTGCCAAAGTATTCAGACTCTTCAAAAGTTGGCTATGTGCTTCAAGGATCTGGAGTTGCAGGGATACTTATTCCGGAGGCAGAGTCGGAGCGAGTGGTGAAAATCCGAAAAGGGGATGCCATTGCAGTACCCATGGGAGTGATCAGCTGGTGGTTCAATGACAATCCTTCGGAGGTTTTGGAAATACTCTTCCTCGGAGATACATCTAAGGCCCACCGATCGGGAGAGTTCACTGATTTCCACCTGATGGGTGGCTCGAATGGGCTGTTCCACGGGTTTAGCAAGGAATTCGTATCGAGGGCATGGGATCTGGAGGAAGATAAGGTCGAGCACCTACTAAAAAGCCAGTCCGGGACTGGAATTGTTCAGTTGAAGGAAGGAAAAAGTCTACCCACACCAGAGTCCCAAGAAGGAGACAAGCTAAGTTTGGTTTTCAACTGCGAGGAAGCCAAATTGGACGTCGATATAAAAAATGGCGGCCGTGTGGTCGTTCTCACCGGCGATTATCTCCCACTGTTGGAAGAAATTGGGTTGGGAGCAGACCTCGTGAAGCTTGATCCGGCGGCAATGTGTTCGCCGGGATTCTCGTCGGACTCAGCTTTCCAAGTAACATACATAACGAGAGGCCATGGGAGAGCTCAGGTGGTGGGGATTGATGGGGTGAGGGTGTTGGAAGCAGAGGTTAAGGCTGGTTTCCTGTTTATCGTTCCCCGTTTCTTCGTAGTCTCCAAGATTGCTGGAGACGAGGGGCTTGAATGGTTTTCCATCATCACCACACCCAAGCCCATCTTCTGTCACCTGGCAGGGAGAACCTCCGTGTGGAAGGCTCTCTCGAAGGAGATTCTGACTGCCTCTTTTGATGTGGACGAAAAAATCGAGCAACATTTCCGCTCCAAACGAATGCAGGACGCCATCTTCTTCCCACCTTCCACTAACTGA___ACTGAGCAGTATGATTATAGATAGGATAGAGGGTTGGTTTTAGTTTTGCCTTTGTTATAATAAATCAGGGGTTTTCTAGTGGCTTATTGGGATAGGGAAGGGAAGGTCTTTTGTGAAGATATCCGTATCCTTTTTATTTGTAAGCTGGTATGACATAAACTGATGGATGGTGATTTGGTGTTATGCCGATTGAGACAGATATGGATCTTGGAATTTAATAAATTCAAATCCCAAATTCTTGAAGACCTTTGAAACTTAAGTAGATGGTAACACGATAAATATGTGGCAAGTAATGTCAAATTCTATGGTAATTCATAAGAGGCTTGATATGGAAATAGGCACCTGTAATGTGCTGATGGTATTGAGGATATGCAGCATCTTTTTGGGACTCTGAATCTTGGTTTTAGCGTAATAAAAGAAAGTCCAGTTGGATAACTACCATGTTAGGAT

Fln Alignment:

AllPineV4_rep_c121174___MEAPPKRVLTPAEPKKILSSEGGSYYAWASSDLCMLAEAKVGAAKLLLNHRGLALPKYSDSSKVGYVLQGSGVAGILIPEAESERVVKIRKGDAIAVPMGVISWWFNDNPSEVLEILFLGDTSKAHRSGEFTDFHLMGGSNGLFHGFSKEFVSRAWDLEEDKVEHLLKSQSGTGIVQLKEGKSLPTPESQE----GDKLSLVFNCEEAKLDVDIKNGGRVVVLTGDYLPLLEEIGLGADLVKLDPAAMCSPGFSSDSAFQVTYITRGHGRAQVVGIDGVRVLEAEVKAGFLFIVPRFFVVSKIAGDEGLEWFSIITTPKPIFCHLAGRTSVWKALSKEILTASFDVDEKIEQHFRSKRMQDAIFFPPSTN
D5AE20_______________MEAPPKRVLTPTEPKKILSSEGGSYYAWASSDLCMLAEAKVGAAKLLLNYRGLALPKYSDSSKVCYVLQGSGVAGILVPEAESERVVKIRKGDAIAVPMGVISWWFNDNPSEVLEILFLGDTSKAHRSGEFTDFYLMGGSNGLFHGFSKEFVSRAWDLEEDKVEHLLKSQSGTGIVKLKEGKSLPTPESQEEEKDGDKPRLVFNCEEAELDVDVKNGGRVVVLTGDYLPMLEQIGLGADLVKLDPAAMCSPGFSSDSAFQVTYIARGHGRVQVVGIDGVRVLEVEVKAGFLFIVPRFFVVSKIAGNEGLEWFSIITTPKPIFCHLAGRTSVWKALSKEILTASFDVDEEMEQHFRSKRTQDAIFFPPPSN

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1359		10	90		0.90298
1360	90		10		0.90298
1362		10		90	0.90298
1363	90		10		0.90298
1366		10	90		0.90298
1367	90	10			0.90298
1369	90			10	0.90298
1372	90	10			0.90298
1375			90	10	0.90298
1377			90	10	0.90298
1378		10	90		0.90298
1379	10		90		0.90298
1706		66		33	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain