SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene78359

Length: 336 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene78359
AATGTAGAAGGAGGGAGTTGCACCAGAGTAGCTGTAAGATGGTGAGCGTTGAAGAACTCCTTCAGCCAGACAAGGCTCCTCTCTTGGGTGTGGCCTTGGCTGTTGTGGCTGTAGCTGTGGGAAGAAATTTAAATTGGTTCAGCGCACTCAATTGAGCCATAATGTGGCTAAATTTCGCTTTGCACTCCCAACTCCGACATCTGTGTTGGGGCTTCCAATTGGGCAGCATATCAGCTGCCAGGGAAAGGATGCTGAAGGTGAAGAAGTCATCAAACCCTATACTCCTACTACCTTGGATTCTGATGTCGGTCTTACTTTGTATTCTTGGTTGTATTT

Ace file of the UniGene sp_v2.0_unigene78359

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH:cytochrome b5 reductase [Vernicia fordii] gb\|AAV69021.1\| NADH:cytochrome b5 reductase [Vernicia fordii]	-	-	2.0e-26	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	nadh:cytochrome b5 reductase	-	-	7.67081e-36	95%

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-
Sma3	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	-
Sma3	NADH:cytochrome b5 reductase (CBR)	IPR001834	-	-
Sma3	Oxidoreductase, FAD-binding domain	IPR008333	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRC8

Fln msg: Distance to subject end: 162 aas, atg_distance in limit (1-15): atg_distance = 8, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 94 - 281

Fln protein: RTPSARQGSSLGCGLGCCGCSCGKKFKLVQRTQLSHNVAKFRFALPTPTSVLGLPIGQHISCQGKDAEGEEVIKPYTPTTLDSDVGLTLYSWLY

Protein Length: 95

Fln nts: AATGTAGAAGGAGGGAGTTGCACCAGAGTAGCTGTAAGATGGTGAGCGTTGAAGAACTCCTTCAGCCAGACAAGGCTCCTCTCTTGGGTGTGGCCTTGGCTGTTGTGGCTGTAGCTGTGGGAAGAAATTTAAATTGGTTCAGCGCACTCAATTGAGCCATAATGTGGCTAAATTTCGCTTTGCACTCCCAACTCCGACATCTGTGTTGGGGCTTCCAATTGGGCAGCATATCAGCTGCCAGGGAAAGGATGCTGAAGGTGAAGAAGTCATCAAACCCTATACTCCTACTACCTTGGATTCTGATGTCGGTCTTACTTTGTATTCTTGGTTGTATTT

Fln Alignment:

AllPineV4_rep_c120376___KKFKLVQRTQLSHNVAKFRFALPTPTSVLGLPIGQHISCQGKDAEGEEVIKPYTPTTLDSDVG
A9NRC8_______________KKFKLVQRTQLSHNVAKFRFALPTPTSVLGLPIGQHISCQGKDAEGEEVLKPYTPTTLDSDVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain